Locus 6538

Sequence ID X_DroMel_CAF1
Location 16,366,146 – 16,366,241
Length 95
Max. P 0.999916
window10673

overview

Window 3

Location 16,366,146 – 16,366,241
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 96.42
Mean single sequence MFE -32.66
Consensus MFE -31.38
Energy contribution -31.98
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.60
Structure conservation index 0.96
SVM decision value 4.54
SVM RNA-class probability 0.999916
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16366146 95 + 22224390
AGACACAGAGAGGCGCACUAGGCGUAUACGCAAUCGUUGCUGGUUGCGGCCACAUCAAGUAUACGCCAUGGCUAACACGCGCUUUUGCACAAUUA
........((((((((....((((((((((((((((....)))))))(....).....))))))))).((.....)).))))))))......... ( -33.60)
>DroSec_CAF1 38950 95 + 1
AGACACAGAGAGGCGCACUAGGCGUAUACGCAAUCGUUGCUGGUUGCGGCCACAUCAAGUAUACGCCAUGUCUAACACGCGCUUUUGCACAAUUA
........((((((((....((((((((((((((((....)))))))(....).....))))))))).((.....)).))))))))......... ( -33.10)
>DroSim_CAF1 26900 95 + 1
AGACACAGAGAGGCGCACUAGGCGUAUACGCAAUCGUUGCUGGUUGCGGCCACAUCAAGUAUACGCCAUGUCUAACACGCGCUUUUGCACAAUUA
........((((((((....((((((((((((((((....)))))))(....).....))))))))).((.....)).))))))))......... ( -33.10)
>DroEre_CAF1 24668 95 + 1
AGGCACAGAGCGGCGCACUAGGCGUAUACGCAAUCGUUGCUGCUUGCGGCCACAUCAAGUAUACGCCUUGGCUAACACGCGCUUUUACACAAUUA
..((.....))(((((...((((((((((......((.((((....)))).)).....))))))))))((.....)).)))))............ ( -30.60)
>DroYak_CAF1 23779 95 + 1
AAACACAGAGAGGCGCACUAGGCGUAUACGCAAUCGUUGCUGGUUGCGGCCACAUCAAGUAUACGCCAUGGCUAACACGCGCUUUAGCACAAUUA
.........(((((((....((((((((((((((((....)))))))(....).....))))))))).((.....)).))))))).......... ( -32.90)
>consensus
AGACACAGAGAGGCGCACUAGGCGUAUACGCAAUCGUUGCUGGUUGCGGCCACAUCAAGUAUACGCCAUGGCUAACACGCGCUUUUGCACAAUUA
........((((((((....((((((((((((((((....)))))))(....).....))))))))).((.....)).))))))))......... (-31.38 = -31.98 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:15 2006