Locus 6525

Sequence ID X_DroMel_CAF1
Location 16,348,960 – 16,349,054
Length 94
Max. P 0.620067
window10653

overview

Window 3

Location 16,348,960 – 16,349,054
Length 94
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 75.60
Mean single sequence MFE -24.77
Consensus MFE -9.24
Energy contribution -10.93
Covariance contribution 1.69
Combinations/Pair 1.05
Mean z-score -2.18
Structure conservation index 0.37
SVM decision value 0.18
SVM RNA-class probability 0.620067
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16348960 94 - 22224390
GUAACCCACGAACCCA---AGGCAGUCGUCACUGGAG-CC--AAAUAUUGU----CAUACAAUAUGCAUGGUGGGGCAAUUAAAAAGUUG-CCAGAACAUGCA-AG
................---.(((..(((....))).)-))--..((((((.----....))))))(((((....(((((((....)))))-))....))))).-.. ( -24.00)
>DroSec_CAF1 16404 93 - 1
GUAACCCACGAACCCA---AGGCAGUCGUCACUGGGG-CC--AAAUAUUGU----CAUACAAUAUGCAUGGCGGGGCAAUUAA-AAGUUG-CCAGAACAUGCA-AG
(((..((.....((((---.(((....)))..))))(-((--(.((((((.----....))))))...))))))((((((...-..))))-))......))).-.. ( -29.00)
>DroSim_CAF1 11599 92 - 1
GUAACCCACGAACCCA---AGGCGGUCGUCACUGGGG-CC--AAAUAUUGU----CAUACA-UAUGCAUGGCGGGGCAAUUAA-AAGUUG-CCAGAACAUGCA-AG
.........(..((((---.(((....)))..)))).-.)--.........----......-..((((((....((((((...-..))))-))....))))))-.. ( -26.30)
>DroEre_CAF1 10632 93 - 1
GUAACCCACGAGCCCA---AGGCAGUCGUCACUGGGG-CC--AAAUAUUGU----CAUACUAUAUGCAUGGCGGGGCAAUUAA-AAGUUU-GCAGAACAUGCA-AG
(((.(((..(.((((.---.(((....)))....)))-))--.......((----(((.(.....).))))))))((((....-....))-))......))).-.. ( -24.30)
>DroMoj_CAF1 11876 85 - 1
-----------G-CCA---UGGCC-CCAGCAAUGGGACAC--AAAUAUUGUCCCCCAUACAAUAUGCAUGACAGGGCAAUUAA-AGU-UGCCCAAAGCAUACA-AA
-----------(-(((---((..(-(((....))))....--..(((((((.......))))))).))))...(((((((...-.))-)))))...)).....-.. ( -26.80)
>DroAna_CAF1 11437 85 - 1
---------GAACCGAAACAGGAAGCC------GGAG-GCAAAAAUAAUGU----CAUACAAAAUGCAUGGCGGUGCAAUUAA-AAUUUGCCCAGAACAUGCACAA
---------...((......))..(((------...)-))...........----.........((((((..((.((((....-...))))))....))))))... ( -18.20)
>consensus
GUAACCCACGAACCCA___AGGCAGUCGUCACUGGGG_CC__AAAUAUUGU____CAUACAAUAUGCAUGGCGGGGCAAUUAA_AAGUUG_CCAGAACAUGCA_AG
............................................(((((((.......)))))))(((((....(((((((....))))).))....))))).... ( -9.24 = -10.93 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:58 2006