Locus 6515

Sequence ID X_DroMel_CAF1
Location 16,320,251 – 16,320,366
Length 115
Max. P 0.992437
window10641

overview

Window 1

Location 16,320,251 – 16,320,366
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.57
Mean single sequence MFE -26.38
Consensus MFE -24.85
Energy contribution -24.63
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.68
Structure conservation index 0.94
SVM decision value 2.33
SVM RNA-class probability 0.992437
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16320251 115 - 22224390
CAAGUUAAUACGUAACAAAUUGACAAAUCAAAUAAGUGAUCAACCAUCAGGUGAGAGGACCAACCAGAUCAGUUGGAUUUGGAGCGAAGGUUUUUAUCCACUUGUUUU-----CCAAUUA
...((((((.........)))))).....(((((((((((.((((.((.(((......)))..(((((((.....)))))))...)).))))...)).))))))))).-----....... ( -25.50)
>DroVir_CAF1 26858 117 - 1
CAAGUUAAUACGUAACAAAUUGACAAAUCAAAUAAGUGAUCAACCUUCAGGUGAGAGGAUCAACCAGAUCAGUUGGAUUUGGAGCGAAGGUUUUUAUCCACUUGUUUUU---UCAAUUUA
...((((.....))))(((((((......(((((((((((.(((((((...(((.....))).(((((((.....)))))))...)))))))...)).)))))))))..---))))))). ( -29.10)
>DroGri_CAF1 26308 114 - 1
CAAGUUAAUACGUAACAAAUUGACAAAUCAAAUAAGUGAUCAACCAUCAGGUGAGAGGACCAACCAGAUCAGUUGGAUUUGGAGCGAAGGUUUUUAUCCACUUGUUUUC------AAUUA
...((((.....)))).((((((......(((((((((((.((((.((.(((......)))..(((((((.....)))))))...)).))))...)).)))))))))))------)))). ( -26.60)
>DroWil_CAF1 29361 120 - 1
CAAGUUAAUACGUAACAAAUUGACAAAUCAAAUAAGUGAUCAACCAUCAGGUGAGAGGACCAACCAGAUCAGUUGGAUUUGGAGCGAAGGUUUUUAUCCACUUGUUUUUAUCUCGAAUUA
...((((((.........)))))).....(((((((((((.((((.((.(((......)))..(((((((.....)))))))...)).))))...)).)))))))))............. ( -25.50)
>DroMoj_CAF1 27341 114 - 1
CAAGUUAAUACGUAACAAAUUGACAAAUCAAAUAAGUGAUCAACCAUCAGGUGAGAGGAUCAACCAGAUCAGUUGGAUUUGGAGCGAAGGUUUUUAUCCACUUGUUUUC------ACUUA
...((((((.........))))))........(((((((...(((....)))(((.((((...(((((((.....)))))))(((....)))...)))).)))....))------))))) ( -26.10)
>DroAna_CAF1 22047 115 - 1
CAAGUUAAUACGUAACAAAUUGACAAAUCAAAUAAGUGAUCAACCAUCAGGUGAGAGGACCAACCAGAUCAGUUGGAUUUGGAGCGAAGGUUUUUAUCCACUUGUUUU-----CCAAUUA
...((((((.........)))))).....(((((((((((.((((.((.(((......)))..(((((((.....)))))))...)).))))...)).))))))))).-----....... ( -25.50)
>consensus
CAAGUUAAUACGUAACAAAUUGACAAAUCAAAUAAGUGAUCAACCAUCAGGUGAGAGGACCAACCAGAUCAGUUGGAUUUGGAGCGAAGGUUUUUAUCCACUUGUUUU_____C_AAUUA
...((((((.........)))))).....(((((((((((.((((.((.(((......)))..(((((((.....)))))))...)).))))...)).)))))))))............. (-24.85 = -24.63 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:46 2006