Locus 6494

Sequence ID X_DroMel_CAF1
Location 16,291,986 – 16,292,090
Length 104
Max. P 0.912714
window10607

overview

Window 7

Location 16,291,986 – 16,292,090
Length 104
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 92.74
Mean single sequence MFE -19.37
Consensus MFE -19.59
Energy contribution -19.37
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.69
Structure conservation index 1.01
SVM decision value 1.08
SVM RNA-class probability 0.912714
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16291986 104 + 22224390
UGCUUGUGUGUGGUUGUAUAUGCAACCUAUGUUUUACUAAAGAUCUCGAAUUUUUUAUGUAGAAUAUCUAAUUGCAAUAAUUGUUCUUAUUUCUUGGAUUCGUC
(((........((((((....)))))).(((((((((((((((........)))))).)))))))))......)))............................ ( -17.90)
>DroEre_CAF1 7456 95 + 1
UGCUUGUGUGUGGUUGCAUAUGCAACCUAUGUUUUACUAAAGAUCUCGAAUUUUUUAUGUAGAAUAUCUAAUUGCAAUAAUUGUUCUUAUUUCCU---------
(((........((((((....)))))).(((((((((((((((........)))))).)))))))))......)))...................--------- ( -20.10)
>DroYak_CAF1 6661 95 + 1
UGCUUGUGUGUGGUUGCAUAUGCAACCUAUGUUUUACUAAAGAUCUCGAAUUUUUUAUGUAGAAUAUCUAAUUGCAAUAAUUGUUCUUAUUUCCU---------
(((........((((((....)))))).(((((((((((((((........)))))).)))))))))......)))...................--------- ( -20.10)
>consensus
UGCUUGUGUGUGGUUGCAUAUGCAACCUAUGUUUUACUAAAGAUCUCGAAUUUUUUAUGUAGAAUAUCUAAUUGCAAUAAUUGUUCUUAUUUCCU_________
(((........((((((....)))))).(((((((((((((((........)))))).)))))))))......)))............................ (-19.59 = -19.37 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:14 2006