Locus 6492

Sequence ID X_DroMel_CAF1
Location 16,273,267 – 16,273,371
Length 104
Max. P 0.860272
window10604

overview

Window 4

Location 16,273,267 – 16,273,371
Length 104
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 89.29
Mean single sequence MFE -27.48
Consensus MFE -25.67
Energy contribution -27.30
Covariance contribution 1.63
Combinations/Pair 1.06
Mean z-score -1.62
Structure conservation index 0.93
SVM decision value 0.83
SVM RNA-class probability 0.860272
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16273267 104 - 22224390
----CGUUUUGCUCGGUGCGCGAUAAGUAUUGACAAUUAAGUAGCGUUUGAUAGUAGCGUUUUACCUAAUCGGGCACUGGCCAAAAUGAUUGACACCUCCUAUACUAA
----(((((((..((((((.((((.((((((........))))(((((.......))))).....)).)))).))))))..))))))).................... ( -27.10)
>DroSec_CAF1 10253 108 - 1
UUAGCGUUUUGCUCGGUGCGCGAUAAGUAUUGACAAUUAAGUAGCGUUUGAUAGUAGCAUUCUAUCUAAUCGGGCACUGGCCAAAAUGAUUGACACCUUCUAUACUAA
(((((((((((..((((((.((((...((((........))))......(((((.......)))))..)))).))))))..))))))).))))............... ( -27.70)
>DroEre_CAF1 10224 104 - 1
UUAAC--UUUGCUCGGUGCGCGAUAAGUAUUGACAAUUAAGUAGCGUUUGAUAGUAGCUUUAUACCUUAUCGGGCACUGGCCAAAAUGAUUGACACCUCCU--ACUAA
.....--((((..((((((.((((((((((........((((.((........)).)))).))).))))))).))))))..))))................--..... ( -26.20)
>DroYak_CAF1 9914 101 - 1
UUAGC--UUUGCUCGGUGCGCGAUAAGUAUUGACAAUCAAGUAGCGUUUGAUAGUAGCUUUAUACCUUAUCGGGCACUGACCAAAAUGAUUGACACCUU-----CGAA
.....--((((.(((((((.((((((((((..((.((((((.....)))))).))......))).))))))).))))))).))))....((((.....)-----))). ( -28.90)
>consensus
UUAGC__UUUGCUCGGUGCGCGAUAAGUAUUGACAAUUAAGUAGCGUUUGAUAGUAGCUUUAUACCUAAUCGGGCACUGGCCAAAAUGAUUGACACCUCCU__ACUAA
....(((((((.(((((((.((((((((((..((.((((((.....)))))).))......))).))))))).))))))).))))))).................... (-25.67 = -27.30 +   1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:12 2006