Locus 6491

Sequence ID X_DroMel_CAF1
Location 16,272,933 – 16,273,038
Length 105
Max. P 0.570915
window10603

overview

Window 3

Location 16,272,933 – 16,273,038
Length 105
Sequences 4
Columns 107
Reading direction forward
Mean pairwise identity 86.88
Mean single sequence MFE -24.05
Consensus MFE -15.97
Energy contribution -16.97
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.66
SVM decision value 0.07
SVM RNA-class probability 0.570915
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16272933 105 + 22224390
AAAAAUCACAAAUUGGGUGCACACAUAUAGGA--UCAAGGACGAACAGAACAUCAACAAAAGGCACUUGGACAGCUGCUCAUCGCGUGGCCAAGUGCACACAGUUAG
..........(((((.((((((..........--(((((..(....................)..)))))...((..(.......)..))...)))))).))))).. ( -21.05)
>DroSec_CAF1 9920 104 + 1
AAAGAUCACAAUUUGUGUGCACACAUAUAGGAUAUCAAGGACGAACAGAACAUCAACAAAAGGCACUUGGCCAG---CUCAUCGCGUGGCCAAGUGCACACAGUUAG
....(((.(.((.((((....)))).)).)))).....................(((.....((((((((((((---(.....)).))))))))))).....))).. ( -29.40)
>DroEre_CAF1 9902 100 + 1
AAAAAUCACAAUUUGGGUGCACACAUAUAGGG--UCAGGGUCAAACGGAA--UCAACAAAAGGCACUUGGCCAG---CUCAUCGCAAGGCCAAGUGCACACAGUUAG
............(((.((((((........((--((((((((........--.........))).)))))))..---....((....))....)))))).))).... ( -25.03)
>DroYak_CAF1 9594 99 + 1
AAAAAUCACAAUUUGGGUGCACACAUAUAGAG--UCAAAGACGAAUAGAA--UCAACAAAAGGCACUUGGCCAG---CACAUUGCAUGGCCAAGAACACACAGUUA-
............(((.(((............(--((...)))........--.............(((((((((---(.....)).))))))))..))).)))...- ( -20.70)
>consensus
AAAAAUCACAAUUUGGGUGCACACAUAUAGGA__UCAAGGACGAACAGAA__UCAACAAAAGGCACUUGGCCAG___CUCAUCGCAUGGCCAAGUGCACACAGUUAG
......(((.......)))...................................(((.....(((((((((((.............))))))))))).....))).. (-15.97 = -16.97 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:11 2006