Locus 6457

Sequence ID X_DroMel_CAF1
Location 16,202,701 – 16,202,801
Length 100
Max. P 0.760020
window10545

overview

Window 5

Location 16,202,701 – 16,202,801
Length 100
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 71.12
Mean single sequence MFE -31.22
Consensus MFE -17.24
Energy contribution -16.03
Covariance contribution -1.21
Combinations/Pair 1.32
Mean z-score -1.72
Structure conservation index 0.55
SVM decision value 0.50
SVM RNA-class probability 0.760020
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16202701 100 - 22224390
UUAAGCAUGCGGAUUUCCAGACGCCUAUGCAGCGCGGAAACUGUA---GCAGCUUGCAUAGCA------------CAAUACAGGGUAUCUGUUAGUCGAGGUACUCGACAAUUGC
....(((.((((((.(((......((((((((((((....)....---)).)).)))))))..------------.......))).))))))..((((((...))))))...))) ( -29.06)
>DroSec_CAF1 6794 95 - 1
UUAAGCAUGCAGAU-UCCGGACGCCUAUGCAGCCCGGAAACUGUA---GCAGCUUGCACAGCA------------GAACACAGGGUAUCUGUUAUUCGAGGUACUCGACAA----
....((.(((((.(-(((((.(((....)).).)))))).)))))---)).(((.....))).------------.......((((((((........)))))))).....---- ( -30.30)
>DroYak_CAF1 6030 114 - 1
UUAAGCAGACAGAU-UCCAGAUGGCUGAGCAGCGCGGAAAUAGUCCCUGCUGCUUGUAUACCAUAAAACCCCUAAAUAUACAGGGUGUUUUAUAGUCGAGGUACUCGAAUACAGC
....((...(((..-.((....)))))(((((((.(((.....))).)))))))(((((...(((((((((((........)))).)))))))..(((((...)))))))))))) ( -34.30)
>consensus
UUAAGCAUGCAGAU_UCCAGACGCCUAUGCAGCGCGGAAACUGUA___GCAGCUUGCAUAGCA____________AAAUACAGGGUAUCUGUUAGUCGAGGUACUCGACAA__GC
......................((.((((((((..(....)(((....))))).))))))))....................((((((((........))))))))......... (-17.24 = -16.03 +  -1.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:16 2006