Locus 6450

Sequence ID	X_DroMel_CAF1
Location	16,167,024 – 16,167,121
Length	97
Max. P	0.991797

overview

Window 6

Location	16,167,024 – 16,167,121
Length	97
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	77.83
Mean single sequence MFE	-29.83
Consensus MFE	-15.35
Energy contribution	-15.85
Covariance contribution	0.50
Combinations/Pair	1.15
Mean z-score	-3.17
Structure conservation index	0.51
SVM decision value	2.29
SVM RNA-class probability	0.991797
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16167024 97 + 22224390
AUCAUCAAUUUAGAAAGUGGCGGUCAUAUGCACUACUAUUAGCAUGAGCACAGUUGU----AUAUGCUUGG----CU----AUGUA------UCAAUGUGUUUGCAUUGAUGCAU
................(((((.(.((((((((..(((....((....))..))))))----)))))..).)----))----))(((------(((((((....)))))))))).. ( -27.10)
>DroSim_CAF1 7395 101 + 1
ACCAUUUAUUUAGAAAGUGGCGGUCUUCUGAACUGCUAUUAGCAUGAACACAGUUGUACAUAUAUGCUUGC----UU----AUGUA------UCAAUGUGUUUGCAUUGAUGCAU
...............((((((((((....).)))))))))((((((...((....)).....))))))...----..----(((((------(((((((....)))))))))))) ( -26.60)
>DroEre_CAF1 7420 110 + 1
ACAAUCAAUUUAGAGAGUGGCGGUCAUCAGCACUGCUAUUAGCAUGAACACAAUUGU----AUAUGCUUGGUUAUGUAUCAAUGUGUUUGCAUUGAUGCAUAUCGGUU-UUGUAG
((((...........((((((((((....).)))))))))((((((.(((....)))----.))))))((((.((((((((((((....))))))))))))))))...-)))).. ( -33.00)
>DroYak_CAF1 8064 97 + 1
ACAAUCAAUUUAGAAAGUAGCGGUCAUCUGCACUGCUAUUAGCAUGAACACAGUUGU----AUAUGCUUGG----UU----AUGUA------UCAAUGUGUUUGCAUUGAUGCAU
..((((((.......((((((((((....).))))))))).(((((.(((....)))----.)))))))))----))----(((((------(((((((....)))))))))))) ( -32.60)
>consensus
ACAAUCAAUUUAGAAAGUGGCGGUCAUCUGCACUGCUAUUAGCAUGAACACAGUUGU____AUAUGCUUGG____UU____AUGUA______UCAAUGUGUUUGCAUUGAUGCAU
...............((((((((((....).)))))))))((((((.(((....))).....))))))........................(((((((....)))))))..... (-15.35 = -15.85 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:07 2006