| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,132,934 – 16,133,043 |
| Length | 109 |
| Max. P | 0.511052 |
| Location | 16,132,934 – 16,133,043 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.26 |
| Mean single sequence MFE | -31.97 |
| Consensus MFE | -16.48 |
| Energy contribution | -16.65 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.52 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.511052 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16132934 109 + 22224390 CUUAAAUUGUAUUUG--CUUUCAGAAAAUCCUCAUUGUGGAUGCUCGCAGCUACACCUCCGCAGUUACAAAUCGUGCCAGAGGUGGCGGCUGUGAGUGCAUCGAGUACUAU ........(((((((--..........((((.......))))((((((((((.((((((.((((........).)))..))))))..))))))))))....)))))))... ( -37.90) >DroVir_CAF1 7563 105 + 1 UUUCAAUUUUA------UUUUAAGAAAAUUCUCAUCGUGGAUGCCCGCAGCUAUACGUCAGCGGUCACAAAUCGAGCACGCGGCGGCGGCUGUGAGUGUAUAGAAUAUUAU .........((------(((((.((......)).......((((.(((((((...((((.((((((.......)).).)))))))..))))))).)))).))))))).... ( -24.50) >DroPse_CAF1 7907 111 + 1 AUUACAUUUUCUUUGAAUUUUAAGAAAAUUCUCAUUGUUGAUGCACGAAGCUAUACAUCUGCCGUCACGAAUCGUGCACGCGGUGGCGGCUGUGAGUGCAUUGAGUAUUAU ..(((((((((((........))))))))........(..((((((..((((...((.((((.((((((...)))).))))))))..))))....))))))..)))).... ( -31.70) >DroGri_CAF1 8340 105 + 1 UUCAUAUUCUA------UUUUAAGAAAAUCCUUAUUGUGGAUGCACGCAGCUAUACGUCAGCGGUCACGAAUCGAGCUCGUGGCGGCGGCUGUGAAUGUAUCGAAUAUUAU ...((((((((------(..((((......))))..)))(((((((((((((........((.(((((((.......))))))).)))))))))..))))))))))))... ( -34.40) >DroMoj_CAF1 7311 105 + 1 UUUCAAUUAUA------UUUUUAGAAAAUUCUUAUCGUCGAUGCACGCAGCUAUACGUCGGCGGUCACAAAUCGGGCACGCGGCGGCGGCUGCGAAUGUAUUGAAUACUAU ...........------....................(((((((((((((((...(((((.(((((........))).)))))))..)))))))..))))))))....... ( -32.70) >DroPer_CAF1 8020 111 + 1 AUUAAAUUUUCUUUGAAUUUCAAGAAAAUUCUCAUUGUUGAUGCACGAAGCUAUACAUCUGCCGUCACGAAUCGUGCACGCGGUGGCGGCUGUGAAUGCAUUGAGUAUUAU ....(((((((((.(.....))))))))))........((((((.(((.((.((.(((..((((((((....(((....))))))))))).))).)))).))).)))))). ( -30.60) >consensus UUUAAAUUUUA______UUUUAAGAAAAUUCUCAUUGUGGAUGCACGCAGCUAUACGUCAGCGGUCACAAAUCGUGCACGCGGCGGCGGCUGUGAAUGCAUUGAAUAUUAU .......................................(((((((((((((...((((.((.................))))))..)))))))..))))))......... (-16.48 = -16.65 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:44 2006