Locus 6416

Sequence ID X_DroMel_CAF1
Location 16,073,905 – 16,074,015
Length 110
Max. P 0.999878
window10475

overview

Window 5

Location 16,073,905 – 16,074,015
Length 110
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 67.33
Mean single sequence MFE -23.18
Consensus MFE -14.77
Energy contribution -14.89
Covariance contribution 0.12
Combinations/Pair 1.21
Mean z-score -2.16
Structure conservation index 0.64
SVM decision value 4.35
SVM RNA-class probability 0.999878
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16073905 110 + 22224390
UCAUACUUAAAUAAUGUAGAAACAUUAUA----------AAUGUGGGUGCACUUUACCCAGCGUCCACAUAUUUCUGAUUCCAUUCCAUGAUGAAAGAUCAUGGAAAACCCGGGACAAAU
..........(((((((....))))))).----------.((((((..((..........))..))))))..(((((......(((((((((.....)))))))))....)))))..... ( -29.00)
>DroSec_CAF1 19892 112 + 1
UGAUACUUCAAUAAAGUAAAAACAGUACAUGCAACCC-UAAAGUGGGUGCACUUUACCCAGCAUCCACAUAUUUCUGUUUCCAGU-------UAAACAGCUUGGAAAACCCGGGACAAAA
...(((((.....)))))................(((-....((((((((..........)))))))).........((((((((-------(....))).))))))....)))...... ( -25.90)
>DroYak_CAF1 17306 101 + 1
-CCAACUGAA----------A-AUGAAUAUGCAAUGCUUAAGGUGGAUGCACUUCACCCAGAAUCCACACAUUUCCGAUUCCAGU-------UAAACAUCAUGGAAAACUAGGGACAAAA
-((...((.(----------(-(((.....((...)).....((((((..............)))))).))))).)).(((((..-------.........))))).....))....... ( -14.64)
>consensus
UCAUACUUAAAUAA_GUA_AAACAGUAUAUGCAA__C_UAAAGUGGGUGCACUUUACCCAGCAUCCACAUAUUUCUGAUUCCAGU_______UAAACAUCAUGGAAAACCCGGGACAAAA
..........................................((((((((..........))))))))....(((((.((((((................))))))....)))))..... (-14.77 = -14.89 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:11 2006