Locus 6412

Sequence ID X_DroMel_CAF1
Location 16,072,432 – 16,072,543
Length 111
Max. P 0.976079
window10471

overview

Window 1

Location 16,072,432 – 16,072,543
Length 111
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 72.31
Mean single sequence MFE -19.47
Consensus MFE -13.55
Energy contribution -15.00
Covariance contribution 1.45
Combinations/Pair 1.07
Mean z-score -1.62
Structure conservation index 0.70
SVM decision value 1.76
SVM RNA-class probability 0.976079
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16072432 111 + 22224390
AUUUUUUUUUUUCCGUAUUUCUCUUUUUUUUUCGCGGCACUGAAAUUGGCAAUGGCCGAUUUCUAUAUCACUUCAUAUUAUUCCCAUAUAUAUGGACGACGCCGACGACAG
...............................(((((((...(((((((((....)))))))))....................((((....)))).....)))).)))... ( -25.60)
>DroSec_CAF1 18439 103 + 1
AUUUUUU------CAUAUUUUUCUUUUUUUUUCGCGGCACUGAGUUUGGCAAUGGCCGAUUUCUAUAUCACUCCAUAUUAUUCCCAUA--UAAGGACGACGCCGACGUCGG
.......------...................((((((...(((.(((((....))))).)))........(((.(((.........)--)).)))....)))).)).... ( -18.40)
>DroEre_CAF1 18450 87 + 1
--------------GUUUUUCCUCUUUUCUCUUUUCAAACUGAGAUUGGCAAUGGCCGAUUUCUAUAUCACUCCAUAUUAUUCCCAUA--CAAGGACGACGAC--------
--------------(((..((((..................(((((((((....))))))))).((((......))))..........--..)))).)))...-------- ( -14.40)
>consensus
AUUUUUU______CGUAUUUCUCUUUUUUUUUCGCGGCACUGAGAUUGGCAAUGGCCGAUUUCUAUAUCACUCCAUAUUAUUCCCAUA__UAAGGACGACGCCGACG_C_G
..................................((((...(((((((((....)))))))))....................((........)).....))))....... (-13.55 = -15.00 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:07 2006