Locus 6365

Sequence ID X_DroMel_CAF1
Location 16,015,185 – 16,015,374
Length 189
Max. P 0.832419
window10380 window10381

overview

Window 0

Location 16,015,185 – 16,015,294
Length 109
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 93.12
Mean single sequence MFE -34.53
Consensus MFE -32.33
Energy contribution -31.67
Covariance contribution -0.66
Combinations/Pair 1.09
Mean z-score -1.93
Structure conservation index 0.94
SVM decision value 0.72
SVM RNA-class probability 0.832419
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16015185 109 - 22224390
UGAUGCAACAUCGCGAUGGCGAUGGCGAUGGCGAUUGCGAUGGCAACACGGUGGCGAAUACGAAUACAAUCGAAUAGAGGCAACGCAAUCGAUGUGUGUGCCAACUGAC
((.(((..(((((((((.((.((....)).)).)))))))))))).))((((((((.......(((((.((((.....(....)....))))))))).)))).)))).. ( -37.70)
>DroSec_CAF1 83083 102 - 1
UGAUGCAACAUCGCGAUGGCG------AUGGCAAUUGCGAUGGCAACACGGUGGCGAGUACGAAUACAAUCGAAUAGA-GCAACGCAAUCGAUGUGUGUGCCAACUGAC
((.(((..(((((((((.((.------...)).)))))))))))).))(((((((.....(((......)))......-(((.((((.....)))))))))).)))).. ( -32.10)
>DroSim_CAF1 77077 102 - 1
UGAUGCAACAUCGCGAUGGCG------AUGGCAAUUGCGAUGGCAACACGGUGGCGAGUACGAAUACAAUCGAGCAGA-GCAACGCAAUCGAUGUGUGUGCCAACUGAC
((.(((..(((((((((.((.------...)).)))))))))))).))(((((((..((.(((......))).))...-(((.((((.....)))))))))).)))).. ( -33.80)
>consensus
UGAUGCAACAUCGCGAUGGCG______AUGGCAAUUGCGAUGGCAACACGGUGGCGAGUACGAAUACAAUCGAAUAGA_GCAACGCAAUCGAUGUGUGUGCCAACUGAC
((.(((..(((((((((.((..........)).)))))))))))).))(((((((..((.(((......))).))....(((.((((.....)))))))))).)))).. (-32.33 = -31.67 +  -0.66)

alignment

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secondary structure

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dotplot

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Window 1

Location 16,015,260 – 16,015,374
Length 114
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 86.12
Mean single sequence MFE -32.50
Consensus MFE -23.31
Energy contribution -23.50
Covariance contribution 0.19
Combinations/Pair 1.12
Mean z-score -1.80
Structure conservation index 0.72
SVM decision value 0.43
SVM RNA-class probability 0.732783
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16015260 114 + 22224390
UCGCCAUCGCCAUCGCCAUCGCGAUGUUGCAUCAAAUGCGCUGUAAUAUACUAACGUCUUUUGGUGUUUUGCUACGAUUUUCUGGCGAUCCACUUGAGUUGCAGUGGGGCACAA
..(((...((((((((....))))))..))........(((((((((..((....))..((.((((..((((((.(.....)))))))..)))).))))))))))).))).... ( -36.90)
>DroSec_CAF1 83157 107 + 1
UUGCCAU------CGCCAUCGCGAUGUUGCAUCAAAUUCGCUGUAAUAUACUAACGUCUUUUGCUGU-UUGCUGCGAUUCUCUGGCGAUCCACUUGAGUUGCAGUGGGGCACAA
.((((((------(((((..(.((.((((((.(((((.....((((...((....))...)))).))-))).)))))))).))))))))(((((........)))))))))... ( -34.40)
>DroSim_CAF1 77151 107 + 1
UUGCCAU------CGCCAUCGCGAUGUUGCAUCAAAUUCGCUGUAAUAUACUAACGUCUUUUUGUGU-UUGCUGCGAUUUUCUGGCGAUUCACUUGAGUUGUAGUGGGGCACAA
.((((((------(((((....((((...))))(((.((((.((((.((((............))))-)))).)))).))).)))))))(((((........)))))))))... ( -31.50)
>DroEre_CAF1 81528 93 + 1
------------------UCGCGAUGUUGCAUCAAAUGCGCUGUAAUAUACUGACGUCU--UGCUGU-UUGCUGCGAUUCUCUGGCGAUCCACUUGAGUUGCAGUGGGGCACAA
------------------....((((((((((...))))...(((...))).)))))).--((((..-(..(((((((((..(((....)))...)))))))))..)))))... ( -27.20)
>consensus
UUGCCAU______CGCCAUCGCGAUGUUGCAUCAAAUGCGCUGUAAUAUACUAACGUCUUUUGCUGU_UUGCUGCGAUUCUCUGGCGAUCCACUUGAGUUGCAGUGGGGCACAA
.......................((((((((.(......).))))))))..............((((.(..(((((((((..(((....)))...)))))))))..).)))).. (-23.31 = -23.50 +   0.19)

alignment

Postscript

secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:44 2006