Locus 6361

Sequence ID X_DroMel_CAF1
Location 16,012,819 – 16,012,921
Length 102
Max. P 0.912101
window10376

overview

Window 6

Location 16,012,819 – 16,012,921
Length 102
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 84.41
Mean single sequence MFE -23.23
Consensus MFE -19.09
Energy contribution -19.20
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -2.32
Structure conservation index 0.82
SVM decision value 1.08
SVM RNA-class probability 0.912101
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16012819 102 + 22224390
UUCAUGCAUAAGUUAAUAUGCCUCGCUGGAAGUACGUAUGUAUGUAUGUACACCCCCU-UAUUCCCCUAUCCCUAUAAGUGGUGGGCUUAUGUUUAUGCGCCG
.....(((((((...(((.(((.((((((..((((((((....))))))))..)).((-(((............))))).))))))).))).))))))).... ( -27.10)
>DroSec_CAF1 80735 87 + 1
UUCAUGCAUAAGUUAAUAUGCCUCGCUGGAAAUACUUAUGUAUGUAUGUACACC--CUCUAUACCCCUAUCCCUAUAAGUAGUGGGCUC--------------
..(((((((((((.......((.....))....)))))))))))..........--.......(((((((........)))).)))...-------------- ( -20.20)
>DroSim_CAF1 74763 89 + 1
UUCAUGCAUAAGUUAAUAUGCCUCGCUGGAAAUACUUAUGUAUGGAUGUACACCCCCUCUAUACCCCUAUCCCUAUAAGUAGUGGGCUC--------------
(((((((((((((.......((.....))....))))))))))))).................(((((((........)))).)))...-------------- ( -22.40)
>consensus
UUCAUGCAUAAGUUAAUAUGCCUCGCUGGAAAUACUUAUGUAUGUAUGUACACCCCCUCUAUACCCCUAUCCCUAUAAGUAGUGGGCUC______________
..(((((((((((.......((.....))....)))))))))))...................(((((((........)))).)))................. (-19.09 = -19.20 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:39 2006