Locus 6358

Sequence ID X_DroMel_CAF1
Location 16,009,526 – 16,009,646
Length 120
Max. P 0.961071
window10373

overview

Window 3

Location 16,009,526 – 16,009,646
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 77.68
Mean single sequence MFE -27.88
Consensus MFE -15.94
Energy contribution -17.94
Covariance contribution 2.00
Combinations/Pair 1.15
Mean z-score -2.43
Structure conservation index 0.57
SVM decision value 1.52
SVM RNA-class probability 0.961071
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16009526 120 + 22224390
CAUUUACGCAAGCAUAUACUAGUUAUCUGCUAAAGCGACAAUCGUGAAAGUCUUAAUCAGAUAGAUGUGAAACCAAAAAACUAUUUGUGUCAAAGUUGGCAGAUAGAAGGACAGAUGCAG
...........((((...((..(((((((((((...((((.....(.....).....(((((((...((....)).....)))))))))))....)))))))))))..))....)))).. ( -26.10)
>DroSec_CAF1 77533 116 + 1
CAUUUACGCAAGCAUAUGCUAGUUAUCUGCUAAAGCGACAAUCGUGAAAGUCAUAUACAGAUAGAUGUAAAACCA----ACUAUUUGGGCCAAAGCUGGCAGAUAAAAGGACAGAUGCAG
...........((((.((((..(((((((((..((((((..........))).....(((((((.((......))----.))))))).......))))))))))))..)).)).)))).. ( -32.00)
>DroSim_CAF1 72003 120 + 1
CAUUUACGCAAGCAUAUGCUAGUUAUCUGCCAAAGCGACAAUCGUGAAAGUCAUAUACAGAUAGAUGUGAAACCAAAAAACUAUUUAGGCCAAAGUUGGCAGAUAAAAGGACAGAUGCAG
...........((((.((((..(((((((((((.(((.....))).....((((((........)))))).........................)))))))))))..)).)).)))).. ( -30.00)
>DroEre_CAF1 75876 95 + 1
CAUUUACGCAAGUAUAUACUAGUUA--------------GGUCGUGAAAGUCUUAUUUAGAUAGAUGUAA--------AUCUAUUUGGGGGAGAA---ACAGCCAAGUGGACAGAUGCAA
(((((((....)).....(((.((.--------------(((.((.....((((.(((((((((((....--------))))))))))).)))).---)).))))).)))..)))))... ( -23.40)
>consensus
CAUUUACGCAAGCAUAUACUAGUUAUCUGCUAAAGCGACAAUCGUGAAAGUCAUAUACAGAUAGAUGUAAAACCA___AACUAUUUGGGCCAAAGUUGGCAGAUAAAAGGACAGAUGCAG
...........((((...((..((((((((((..(((.....)))............(((((((................))))))).........))))))))))..))....)))).. (-15.94 = -17.94 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:37 2006