Locus 6357

Sequence ID X_DroMel_CAF1
Location 16,009,372 – 16,009,486
Length 114
Max. P 0.929670
window10372

overview

Window 2

Location 16,009,372 – 16,009,486
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.80
Mean single sequence MFE -33.36
Consensus MFE -27.28
Energy contribution -27.12
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -2.00
Structure conservation index 0.82
SVM decision value 1.20
SVM RNA-class probability 0.929670
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16009372 114 + 22224390
UUUUU---UUUUUUUUGUUGUUUCCUUCUUUUUGGAGAAAGGCGAAAGUGUGUGAGUCCAAUUUGGUGCGCGAGUGUGAAUGUGAUUGGCACGUAGU---GGCCAGCAUGUCCCAUGCUG
.....---............(((((........)))))..(((.(...(((((.((((((..((.(..(....)..).)))).)))).)))))...)---.)))((((((...)))))). ( -32.10)
>DroSec_CAF1 77392 101 + 1
UCUUU----------------UUCCUUCAUUUUGGAGAAAGGCGAAAGUGUGUGAGUCCAAUUUGGUGCGCGAGUGUGAAUGUGAUUGGCACGUAGU---GGUCAGCAUGUCCCAUGCUG
.((((----------------((((........))))))))((....))((((.((((((..((.(..(....)..).)))).)))).)))).....---...(((((((...))))))) ( -34.30)
>DroSim_CAF1 71862 101 + 1
UCUUU----------------UUCCUUCAUUUUGGAGAAAGGCGAAAGUGUGUGAGUCCAAUUUGGUGCGCGAGUGUGAAUGUGAUUGGCACGUAGU---GGUCAGCAUGUCCCAUGCUG
.((((----------------((((........))))))))((....))((((.((((((..((.(..(....)..).)))).)))).)))).....---...(((((((...))))))) ( -34.30)
>DroEre_CAF1 75738 98 + 1
---------------UU----UUCCUUCUUUUUGGAGAAAGGCGAAAGUGUGUGAGUCCAAUUUGGUGCGCGAGUGUGAAUGUGAUUGGCACGUAGU---GGUCAGCAUGUCCCAUGCUG
---------------((----((((........))))))..((....))((((.((((((..((.(..(....)..).)))).)))).)))).....---...(((((((...))))))) ( -30.20)
>DroYak_CAF1 61055 120 + 1
UUUUUUUUUUUUUUUUUUGCCUUACUUCUUUUUGGAGAAAGGCGAAAGUGUGUGAGUUCAAUUUGGUGCGCGAGUGUGAAUGUGAUUGGCACGUAGUGGUGGUCAGCAUGUCCCAUGCUG
.............((((((((((.((((.....)))).)))))))))).((((.(((.((..((.(..(....)..).))..))))).))))...........(((((((...))))))) ( -35.90)
>consensus
UCUUU__________U_____UUCCUUCUUUUUGGAGAAAGGCGAAAGUGUGUGAGUCCAAUUUGGUGCGCGAGUGUGAAUGUGAUUGGCACGUAGU___GGUCAGCAUGUCCCAUGCUG
........................((((.....))))....((....))((((.((((((..((.(..(....)..).)))).)))).))))...........(((((((...))))))) (-27.28 = -27.12 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:36 2006