| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,008,386 – 16,008,506 |
| Length | 120 |
| Max. P | 0.989250 |
| Location | 16,008,386 – 16,008,506 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.42 |
| Mean single sequence MFE | -35.66 |
| Consensus MFE | -30.96 |
| Energy contribution | -31.92 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.87 |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.989250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16008386 120 + 22224390 GAUCUGGGUUUUGUGAUCUAAGUGUUCUAUAAGGAGUGAUUCCCAAGUCGUUUCGUCUGGGAUUCCGUCUCCUAGGAUGUAACUAGUGAUGCCAAUUUAUUGGCCAAUAUUAGUUGCUUA ....((((((....))))))...(((((...(((((.((.(((((.(.((...)).)))))).))...))))))))))((((((((((..(((((....)))))...))))))))))... ( -36.90) >DroSec_CAF1 76254 120 + 1 GAUCUGGGUUUUGUGAUCUAAGUGUUCUAUAAGGAGUGAUUCCCAAGUCGAUUCGUCUGGGAUUCCGUCUCCUAGGAUGUAACUAGUGAUGCCAAUUUAUUGGUCAAUAUUAGUUGCUCA ....((((((....))))))...(((((...(((((.((.(((((.(.((...)).)))))).))...))))))))))((((((((((.((((((....)))).)).))))))))))... ( -36.50) >DroSim_CAF1 70875 120 + 1 GAUCUGGGCUUUGUGAUCUAAGUGUUCUAUAAGGAGUGAUUCCCAAGUCGAUUCGUCUGGGAUUCCGUCUCCUAGGAUGUAACUAGUGAUGCCAAUUUAUUGGCCAAUAUCAGUUGCUCA ((((..........)))).....(((((...(((((.((.(((((.(.((...)).)))))).))...))))))))))((((((.(((..(((((....)))))...))).))))))... ( -33.00) >DroEre_CAF1 74770 118 + 1 GAUCUGGGUUUCGAGAUCUAAGUGUUCUAUAAGGAGUGAUUCCCAAGUCGACUCGUCUGGGAUACCGUCUCCUAGGAUG--ACUAGUGAUGCCUAUUUAUUGGCCAAUAUUAGUUUCUUA (((((.(....).))))).............(((((((..(((((.(.((...)).))))))...)).)))))((((.(--(((((((..(((........)))...)))))))))))). ( -33.10) >DroYak_CAF1 60112 120 + 1 GAUCUGGGCUCUGAGAUCUAAGUGUUCUAUAAGGAGUGAUUCCCAAGUCGACUCGUCUGGGAUUCCGUCUCCUAGAAUGAAACCAGUGAUGGCAAUUUAUUGGCCAAUAUUGGUAGCCUA ....((((((.............(((((...(((((.((.(((((.(.((...)).)))))).))...))))))))))...(((((((.((((.........)))).))))))))))))) ( -38.80) >consensus GAUCUGGGUUUUGUGAUCUAAGUGUUCUAUAAGGAGUGAUUCCCAAGUCGAUUCGUCUGGGAUUCCGUCUCCUAGGAUGUAACUAGUGAUGCCAAUUUAUUGGCCAAUAUUAGUUGCUUA ((((..........)))).....(((((...(((((.((.(((((.(.((...)).)))))).))...))))))))))((((((((((..(((((....)))))...))))))))))... (-30.96 = -31.92 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:34 2006