Locus 6317

Sequence ID	X_DroMel_CAF1
Location	15,978,289 – 15,978,390
Length	101
Max. P	0.862260

overview

Window 1

Location	15,978,289 – 15,978,390
Length	101
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	84.42
Mean single sequence MFE	-44.48
Consensus MFE	-28.06
Energy contribution	-27.62
Covariance contribution	-0.44
Combinations/Pair	1.07
Mean z-score	-2.43
Structure conservation index	0.63
SVM decision value	0.83
SVM RNA-class probability	0.862260
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15978289 101 + 22224390
CGGAUCGGCCAUUCGGAUCGGUCUU--ACCAGGCUGGUGUUAGAGCU------------GGAGCUGGAGGAGGCACUGAGCCAUAGGCCUCCGUCUCCAUCUCCAUCUCCAUCCG
.(((((((((....)).))))))).--....((.(((.(...(((.(------------((((.((((((.(((.....))).....)))))).))))).)))...).))).)). ( -42.00)
>DroSec_CAF1 46080 97 + 1
CGGAUCGGCCAUUCGGAUCGGUCUUGCACCAGGCUGGUGUUAGAGCU------------GGAGCUGGA---GGCACUGAGCCAUAGGCCUCC---UCCGUCUCCAUCUCCAUCCC
.(((((((((....)).))))))).(((((.....)))))..(((.(------------((((.((((---((....(.(((...)))).))---)))).))))).)))...... ( -38.80)
>DroEre_CAF1 44855 108 + 1
CGGAUCGGCCAUUCGGAUCGGUCUU--ACCAAGCUGCAGUUAGAGCUGCACCUGGAGCUGGAGCUGGA---GGCACUGAGCCAUAGGCCUUCGCCUCCGUCUCCAUCUCCAUC--
.(((((((((....)).))))))).--....((.((((((....)))))).))((((.(((((.((((---(((...(.(((...))))...))))))).))))).))))...-- ( -50.10)
>DroYak_CAF1 28808 108 + 1
CGGAUCGGCCAUUCGGAUCGGUCUU--ACCAAGCUGGAGUUGGAGCUGCACCUGGAGCUGGAGCUGGA---GGCACUGAGCCAUAGGCCUCCGUCUCCGUCUCCAUCUCCAUC--
.(((((((((....)).))))))).--.......(((((.(((((((.(....).))).((((.((((---(((.(((.....)))))))))).))))...)))).)))))..-- ( -47.00)
>consensus
CGGAUCGGCCAUUCGGAUCGGUCUU__ACCAAGCUGGAGUUAGAGCU____________GGAGCUGGA___GGCACUGAGCCAUAGGCCUCCGUCUCCGUCUCCAUCUCCAUC__
.(((((((((....)).))))))).......((((........))))............((((.((((...((....(((((...)).))).....))...)))).))))..... (-28.06 = -27.62 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:31 2006