Locus 6310

Sequence ID X_DroMel_CAF1
Location 15,973,506 – 15,973,624
Length 118
Max. P 0.683451
window10287

overview

Window 7

Location 15,973,506 – 15,973,624
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.67
Mean single sequence MFE -23.86
Consensus MFE -18.90
Energy contribution -18.42
Covariance contribution -0.48
Combinations/Pair 1.17
Mean z-score -1.66
Structure conservation index 0.79
SVM decision value 0.31
SVM RNA-class probability 0.683451
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15973506 118 - 22224390
G-AGGAAGAUUGACAGGGCAAUAAAGAAAUUAUUGGAUUAUAAGCUACACAAACUUUAAGAAGAGAUAAUC-CCGAAAAUGAAACCAAAAUGUUAGCUCUUUAAUAUAUUGCCCUAACUG
.-............(((((((((...........(((((((...((.(...........).))..))))))-).................((((((....)))))))))))))))..... ( -20.20)
>DroSec_CAF1 41339 119 - 1
GAAGGAAGAUUGACAGGGCAAUAAAGAAAUUAUUGGAUUAUAAGCUUCACAAACCUUAAGAGGAGAUAAUCUCCGAAAUCGAA-ACAACAUGUCAGCUCUUUAAUAUAUUGCCCUAACUG
..............(((((((((((....)).....((((..((((..(((..........((((.....))))(....)...-......))).))))...)))).)))))))))..... ( -23.00)
>DroSim_CAF1 32557 118 - 1
GAAGGAAGAUUGACGGGGCAAUAAAGAAAUUAUUGGAUUAUAAGCUUCACAAACCUUAAGAGGAGAUAAUC-CCGAAAACGAA-ACAAAAUGUCAGCUUCUUAAUAUAUUGCCCUAACUG
..............((((((((((((((......(((((((...((((...........))))..))))))-)((....))..-.............)))))....)))))))))..... ( -24.90)
>DroEre_CAF1 40243 117 - 1
-CGGGAAGUUUGACGGGGCAAUAAAGAACUUAUUGGAUUAUAAGCUUCACAAAUGUUGAGAAGAGAUAAUC-CCAAAGACGAA-AUAAAAUGCCAGCUCUUUGAAAUAUGGCCCUAACUG
-.....((((....(((((.(((...........(((((((...((((.((.....)).))))..))))))-)(((((((...-...........).))))))...))).))))))))). ( -25.94)
>DroYak_CAF1 24065 108 - 1
----------UGGCAGGGCAAUGAAGAAAUUAUUGGAUUAUAAGCUUCACAAAUGUUAAGAAGAGAUAAUC-CCAAAGACGAA-ACAAAAUGCCAGCUCUUUAAAAUAUUGCCCUAACUG
----------.(..(((((((((...........(((((((...((((...........))))..))))))-).((((((...-...........).)))))....)))))))))..).. ( -25.24)
>consensus
G_AGGAAGAUUGACAGGGCAAUAAAGAAAUUAUUGGAUUAUAAGCUUCACAAACCUUAAGAAGAGAUAAUC_CCGAAAACGAA_ACAAAAUGUCAGCUCUUUAAUAUAUUGCCCUAACUG
..............(((((((((((....)).(((((((((...((((...........))))..)))))..))))..............................)))))))))..... (-18.90 = -18.42 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:18 2006