| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,971,420 – 15,971,516 |
| Length | 96 |
| Max. P | 0.965507 |
| Location | 15,971,420 – 15,971,516 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 92.42 |
| Mean single sequence MFE | -31.00 |
| Consensus MFE | -28.14 |
| Energy contribution | -27.95 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15971420 96 + 22224390 CUUCGCUUGGAGAGGCUCCGUAGUCUGGCCAAGUGGUAGU------GGUAGUGGUAGUGGCGACUUGACCUUGUCAUGCCAUUAAAUAAAAUCAAACAGAAA ..((((((((..(((((....)))))..))))))))....------..((((((((.((((((.......)))))))))))))).................. ( -29.70) >DroSec_CAF1 39304 96 + 1 CUUCGCUUGGAGAGGCUGCGUAGUCUGCCCAAGUGGUAGU------GGUAGUGGUAGUGGCGACUUGACCUUGUCAUGCCAUUAAAUAAAAUCAAACAGAAA ..((((((((..(((((....)))))..))))))))....------..((((((((.((((((.......)))))))))))))).................. ( -28.80) >DroSim_CAF1 30482 90 + 1 CUUCGCUUGGAGAGGCUGCGUAGUCUGGCCAAGUGGUAGU------------GGUAGUGGCGACUUGACCUUGUCAUGCCAUUAAAUAAAAUCAAACAGAAA ..((((((((..(((((....)))))..))))))))((((------------((((.((((((.......)))))))))))))).................. ( -29.90) >DroYak_CAF1 22124 102 + 1 CUUCGCUUGGAGAGGCUGCGUAGCCUGGCCAAGUGGUAGUGGUAGUGGUAGUGGUAGUGGCGACUUGACCUUGUCAUGCCAUUAAAUAAAAUCAAACAGAAA ..((((((((..(((((....)))))..))))))))((((((((.((..((.(((...(....)...)))))..)))))))))).................. ( -35.60) >consensus CUUCGCUUGGAGAGGCUGCGUAGUCUGGCCAAGUGGUAGU______GGUAGUGGUAGUGGCGACUUGACCUUGUCAUGCCAUUAAAUAAAAUCAAACAGAAA ..((((((((..(((((....)))))..))))))))..................((((((((...((((...)))))))))))).................. (-28.14 = -27.95 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:15 2006