Locus 6294

Sequence ID X_DroMel_CAF1
Location 15,959,848 – 15,959,968
Length 120
Max. P 0.953447
window10259

overview

Window 9

Location 15,959,848 – 15,959,968
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.36
Mean single sequence MFE -35.52
Consensus MFE -32.94
Energy contribution -33.70
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.71
Structure conservation index 0.93
SVM decision value 1.43
SVM RNA-class probability 0.953447
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15959848 120 - 22224390
GCUCGCAGCUUAGCGGCAAUUUUGUUAUGAGACGAAAAUGAGUUUCAUGUGAAAUACGAAAUUAAAAGGAGUUCUCAUCUCGGACAGAUUCUCGUCUGUCUUCUCGCCAGAGCUUCAUAA
((.(((......)))))((((((((((((((((........))))))))......))))))))....((((((((......((((((((....)))))))).......)))))))).... ( -36.52)
>DroSec_CAF1 28001 120 - 1
GCUCGCAGCUUAGCGGCAAUUUUGUUAUGAGACGAAAAUGAGUUUCAUGUGAAAUACGAAAUUAAAAGGAGUUCUCAUCUCGGACAGAUUCUCGUCUGUCUUCUCGCAAGAGCUUCAUAA
((.(((......)))))((((((((((((((((........))))))))......))))))))....((((((((......((((((((....)))))))).......)))))))).... ( -36.52)
>DroEre_CAF1 26724 120 - 1
GCUCGCAGCUUAGCGGCAAUUUUGUUAUGAGACGAAAAUGAGUUUCAUGUGAAAUACGAAAUUAAAAGGAGUUCUCAUCUCGGACAGAUUCUCGUCUGUCUUCUUGCAAGAGCUUCAUAA
((.(((......)))))((((((((((((((((........))))))))......))))))))....((((((((((....((((((((....))))))))...))..)))))))).... ( -36.60)
>DroYak_CAF1 10325 116 - 1
----GCAGCUUAGCGGCAAUUUUGUUAUGAGACGAAAAUGAGUUUCAUGUGAAAUACGAAAUUAAAAGGAGUUCUCAUCUCGGACAGAUUCUCGUCUGUCUUCUCGCCAGAGCUUCAUAA
----((.((...)).))((((((((((((((((........))))))))......))))))))....((((((((......((((((((....)))))))).......)))))))).... ( -32.42)
>consensus
GCUCGCAGCUUAGCGGCAAUUUUGUUAUGAGACGAAAAUGAGUUUCAUGUGAAAUACGAAAUUAAAAGGAGUUCUCAUCUCGGACAGAUUCUCGUCUGUCUUCUCGCAAGAGCUUCAUAA
((.(((......)))))((((((((((((((((........))))))))......))))))))....((((((((......((((((((....)))))))).......)))))))).... (-32.94 = -33.70 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:52 2006