Locus 6256

Sequence ID X_DroMel_CAF1
Location 15,921,691 – 15,921,792
Length 101
Max. P 0.787645
window10196

overview

Window 6

Location 15,921,691 – 15,921,792
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 86.59
Mean single sequence MFE -15.64
Consensus MFE -11.82
Energy contribution -12.14
Covariance contribution 0.32
Combinations/Pair 1.05
Mean z-score -1.88
Structure conservation index 0.76
SVM decision value 0.58
SVM RNA-class probability 0.787645
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15921691 101 + 22224390
AUAAAAUCAAUAAAAUCUGGGCCACCAGUUUUAAAGGUUGAUUAAAAUGACAAAAAGGCCCCCUCUUUGUAUUGUUAAGCUUAAAUGCCAUAUAAGCUAAC
....(((((((.(((.((((....)))).)))....)))))))......(((((.(((...))).)))))...((((.(((((.........))))))))) ( -19.80)
>DroSec_CAF1 20363 97 + 1
AUAAAAUCAAUAAAAUCUGGGCCACCAGUUUUAAAGGUUGAUAAAAAUGACAAAAAGGC----UCUUUGAAUUCUUAAGCUUAAAUACCAUAUAAGCAAAC
.....((((((.(((.((((....)))).)))....))))))........((((.....----..)))).........(((((.........))))).... ( -13.50)
>DroSim_CAF1 5029 97 + 1
AUAAAAUCAAUAAAAUCUGGGCCACCAGUUUUAAAGGUUGAUUAAAAUGACAAAAAGGC----UCUUUGAAUUCUUAAGCUUAAAUACCAUAUAAGCAAAC
....(((((((.(((.((((....)))).)))....))))))).......((((.....----..)))).........(((((.........))))).... ( -14.40)
>DroEre_CAF1 13842 87 + 1
AUAAAAUCAAUAAAAUCUGGGCCACCAGUUUUAAAGGUUGAUUUAAAUAACAAA-C-------------AAUUCUUAAGCCAAAAUGCCAUAUAGGAAAAC
...((((((((.(((.((((....)))).)))....))))))))..........-.-------------..((((((.((......))....))))))... ( -14.40)
>DroYak_CAF1 4994 88 + 1
AUAAAAUCAAUAAAAUCUGGGCCACCAGUUUUAAAGGUUGAUUAAAAUGACAAAAA-------------AAUUCUUAAGCCGAAAUGCCAUAUAGGCAAAC
....(((((((.(((.((((....)))).)))....))))))).............-------------................((((.....))))... ( -16.10)
>consensus
AUAAAAUCAAUAAAAUCUGGGCCACCAGUUUUAAAGGUUGAUUAAAAUGACAAAAAGGC____UCUUUGAAUUCUUAAGCUUAAAUGCCAUAUAAGCAAAC
....(((((((.(((.((((....)))).)))....)))))))...................................(((((.........))))).... (-11.82 = -12.14 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:40 2006