Locus 6251

Sequence ID X_DroMel_CAF1
Location 15,919,703 – 15,919,804
Length 101
Max. P 0.743580
window10184

overview

Window 4

Location 15,919,703 – 15,919,804
Length 101
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 81.43
Mean single sequence MFE -22.43
Consensus MFE -16.02
Energy contribution -16.77
Covariance contribution 0.75
Combinations/Pair 1.15
Mean z-score -1.76
Structure conservation index 0.71
SVM decision value 0.46
SVM RNA-class probability 0.743580
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15919703 101 + 22224390
UUUUAUUUCGAUUGGCACAGCAAUUAUUGUAGAAUUUAUUUUACU-----------------CAUUGUAGUAAGUUGUUUAUCAAUGCACUUUCUGCAACGGGCUUACCAGCCAAUUU
.........(((((((............((((((....)))))).-----------------..((((((.((((.((........)))))).)))))).((.....)).))))))). ( -22.20)
>DroSec_CAF1 18253 101 + 1
UUUUACUUUGGUUGGCACAACAAUUAUUGUAGAAUAUAUUUUACU-----------------CAUUGUAGUAAGUUGUUUAUCAAUGCACUUUCUGCCACGGGCUUACCAGCCAAUUU
.......((((((((((..(((((....((((((....)))))).-----------------.)))))(((..((((.....))))..)))...))))..((.....))))))))... ( -21.20)
>DroSim_CAF1 3069 101 + 1
UUUUACUUUGGUUGGCACAACAAUUAUUGUAGAAUUUAUUUUACU-----------------CAUUGUAGUAAGUUGUUUAUCAAUGCACUUUCUGCCACGGGCUUACCAGCCAAUUU
.......((((((((((..(((((....((((((....)))))).-----------------.)))))(((..((((.....))))..)))...))))..((.....))))))))... ( -21.20)
>DroYak_CAF1 3070 118 + 1
UAUUACAUUGGGUGGCACCGCAAUUAUUGUAGAAUUUCUUUUGCUUAAUAUGGAAUUCAGCUCAUUGUGCUUAUAUGUUUAUCAAUGCGUUUUCUGCAACGGCUUACCCAGCCAAUUU
.......(((((((((...(((.........(((((((.............)))))))(((.(((((.((......))....))))).)))...)))....)).)))))))....... ( -25.12)
>consensus
UUUUACUUUGGUUGGCACAACAAUUAUUGUAGAAUUUAUUUUACU_________________CAUUGUAGUAAGUUGUUUAUCAAUGCACUUUCUGCAACGGGCUUACCAGCCAAUUU
.........(((((((............((((((....))))))....................((((((.(((.(((........)))))).)))))).((.....)).))))))). (-16.02 = -16.77 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:25 2006