Locus 6243

Sequence ID X_DroMel_CAF1
Location 15,906,833 – 15,906,947
Length 114
Max. P 0.873393
window10172

overview

Window 2

Location 15,906,833 – 15,906,947
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.97
Mean single sequence MFE -30.00
Consensus MFE -22.34
Energy contribution -22.50
Covariance contribution 0.16
Combinations/Pair 1.03
Mean z-score -2.23
Structure conservation index 0.74
SVM decision value 0.88
SVM RNA-class probability 0.873393
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15906833 114 - 22224390
GAAUAUACUAUAAAAAAUGAACACAAA-AAUUGCC--CACAGCUGA---GUCCAUUUACAUAUUUGAUCAGUGUUGCCGAGUAGGCACAGGUACCUGUACCUGGAUAUCAGCUUGUGGCA
...........................-...((((--.((((((((---(((((.................(((.(((.....))))))((((....))))))))).))))).))))))) ( -31.50)
>DroSec_CAF1 2380 114 - 1
GCAUAUACUAUUAAAAAUGAACACAAA-AAUUGCC--CACAGCUGU---GUCCAUGUACAUAUUUGAUCAGUGUUGCCGAAUAGCCACAGGUACCUGUACCUGGAUAACAGCUUGUGGCA
...........................-...((((--.((((((((---(((((.(((((......(((.(((..((......))))).)))...))))).))))).))))).))))))) ( -30.40)
>DroSim_CAF1 2234 114 - 1
GCAUAUACUAUAAAAAAUGAACACAAA-AAUUGCC--CACAGCUGU---GUCCAUGUACAUAUUUGAUCAGUGUUGCCGAAUAGCCACAGGUACCUGUACCUGGAUAUCAGCUUGUGGCA
...........................-...((((--.((((((((---(((((.(((((......(((.(((..((......))))).)))...))))).)))))).)))).))))))) ( -30.40)
>DroEre_CAF1 2299 117 - 1
GCAUAUACUAAAAAAA-UGAAUACAAAAAAUUGAC--UACAGCUGUGCUGUCCAUGUACAUAUUUAAUCAGUGUUGUGGAAUAGCCAUAGGUACCUGUACUUGGAUACCAGCUUGUGGCA
................-..............((.(--((((((((.(.((((((.(((((..............(((((.....)))))(....)))))).))))))))))).))))))) ( -27.80)
>DroYak_CAF1 1952 117 - 1
GCAUAUACUAAAUAAAUUGAACACAAAAAACUGCCCCCACAGCUGU---GUCCAUGUACAUAUUUGAUCAGUGUUGUGGAAUAGCCAUAGGUACCUGUACCUGGAUACCAGCUUGUGGCA
....................................((((((((((---(((((.(((((..............(((((.....)))))(....)))))).)))))).)))).))))).. ( -29.90)
>consensus
GCAUAUACUAUAAAAAAUGAACACAAA_AAUUGCC__CACAGCUGU___GUCCAUGUACAUAUUUGAUCAGUGUUGCCGAAUAGCCACAGGUACCUGUACCUGGAUACCAGCUUGUGGCA
...............................((((...(((((((....(((((.(((((......(((.((((((.....))).))).)))...))))).)))))..)))).))))))) (-22.34 = -22.50 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:08:12 2006