Locus 6230

Sequence ID X_DroMel_CAF1
Location 15,830,966 – 15,831,080
Length 114
Max. P 0.999980
window10149

overview

Window 9

Location 15,830,966 – 15,831,080
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 95.33
Mean single sequence MFE -34.31
Consensus MFE -33.52
Energy contribution -33.80
Covariance contribution 0.28
Combinations/Pair 1.06
Mean z-score -2.79
Structure conservation index 0.98
SVM decision value 5.24
SVM RNA-class probability 0.999980
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15830966 114 + 22224390
AUACGGCCACACUGUUGGCAACACGUGCACGAAUUCGACAUUUGAUUUGAAUUCGUUUUGAUUUUUAUCGUAAUUGUACGAAAAGCCAGCAGCAAUGGGCAAGAAGACGAAAGU
....(.(((..((((((((....(((((((((((((((........))))))))))...(((....)))......)))))....))))))))...))).)......((....)) ( -37.10)
>DroSec_CAF1 3090 113 + 1
AUACGGCCACACUGUUGGCAACACGUGCACGAAUUCGACAUUUGAUUUGAAUUCGUUUUGAUU-UUAUCGUGAUUGUACGAAAAGCCAGCAGCAAUGGGCAAGAAGACGAAAGU
....(.(((..((((((((....(((((((((((((((........))))))))))...(((.-..)))......)))))....))))))))...))).)......((....)) ( -35.70)
>DroSim_CAF1 3083 113 + 1
AUACGGCCACAUUGUUGGCAACACGUGCACGAAUUCGACAUUUGAUUUGAAUUCGUUUUGAUU-UUAUCGUGAUUUUACGGAAAGCCAGCAGCAAUGGGCAAGAAGACGAAAGU
.....(((.(((((((((((.....)))((((((((((........)))))))))).(((..(-((.(((((....))))))))..))))))))))))))......((....)) ( -32.50)
>DroEre_CAF1 3829 113 + 1
AUACGGCCACACUGUUGGCAACACGUGCACGAAUUCGACAUUUGAUUUGAAUUUGUUUUUAUU-UGAUCGUGUUUGUACGAAAAGCCAGCAGCAAUGGGCAAGAAAACGAAAGU
....(.(((..((((((((..((.(((.((((((((((........))))))))))...))).-)).(((((....)))))...))))))))...))).)......((....)) ( -32.70)
>DroYak_CAF1 3032 113 + 1
AUACGGCCACACUGUUGGCAACACGUGCACGAAUUCGACAUUUGAUUUGAAUUCGUUUUUAUU-UAAUCGUUAUUGUACGCAAAGCCAGCAGCAAUGGGCAAGAAAACGAAAGU
....(.(((..((((((((....(((((((((((((((........)))))))))).......-...........)))))....))))))))...))).)......((....)) ( -33.56)
>consensus
AUACGGCCACACUGUUGGCAACACGUGCACGAAUUCGACAUUUGAUUUGAAUUCGUUUUGAUU_UUAUCGUGAUUGUACGAAAAGCCAGCAGCAAUGGGCAAGAAGACGAAAGU
....(.(((..((((((((....(((((((((((((((........))))))))))..((((....)))).....)))))....))))))))...))).)......((....)) (-33.52 = -33.80 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:50 2006