Locus 6211

Sequence ID X_DroMel_CAF1
Location 15,810,393 – 15,810,492
Length 99
Max. P 0.644464
window10117

overview

Window 7

Location 15,810,393 – 15,810,492
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 93.54
Mean single sequence MFE -26.50
Consensus MFE -21.86
Energy contribution -22.06
Covariance contribution 0.20
Combinations/Pair 1.12
Mean z-score -1.41
Structure conservation index 0.82
SVM decision value 0.23
SVM RNA-class probability 0.644464
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15810393 99 - 22224390
UAAAACUCUGCAAGGACAACGUUGAGAACUUGAAAGCCGUAAUCCUUACAGGCUGUUGACUGCAGAGGAUCAUAAACCAAAUCUGGUUUCGGAUUCGCU
.....(((((((.(..((((.(..(....)..).(((((((.....))).)))))))).))))))))((((..((((((....))))))..)))).... ( -28.10)
>DroSec_CAF1 12048 99 - 1
UAAAACUCUGCAAGGACAACGUUGAGAACUUGAAAGCCGUAAUCCUUACGGGCUGUUGGCUGCAGAGGAUCAUAAACCAAAUCUGGUUUCGGAUUCGCU
.....(((((((.(..((((.(..(....)..).(((((((.....))).)))))))).))))))))((((..((((((....))))))..)))).... ( -28.30)
>DroSim_CAF1 11949 99 - 1
UAAAACUCUGCAAGGACAACGUUGAGAACUUGAAAGCCGUAAUCCUUACGGGCUGUUGACUGCAGAGGAUCAUAAACCAAAUCUGGUUUCGGAUUCGCU
.....(((((((.(..((((.(..(....)..).(((((((.....))).)))))))).))))))))((((..((((((....))))))..)))).... ( -28.10)
>DroEre_CAF1 10211 99 - 1
UAAAACUUUGCAAGGACAACGUUGAGAAUUUGAAAGCCGUAAUCCUUACGGGUUGUUGGCUGCAGAGGAUCAUAAACGAAAUAUGAUUUCGGAUUCGUU
...(((.(((......))).)))..((((((((.(((((..((((....))))...)))))......(((((((.......)))))))))))))))... ( -22.40)
>DroYak_CAF1 11059 99 - 1
UAAAGCUUUGCAAGGACAAUGUUGAGAACUUGAAAGCCGUGAUCCUUACGGGUCGUUGGCUGCAGAGGAUCAUAAACGAAAUAUGAUUUCGGAUUCGCU
....(((((.((((..(........)..))))))))).(((((((((...(((.....)))...)))))))))...((((((...))))))........ ( -25.60)
>consensus
UAAAACUCUGCAAGGACAACGUUGAGAACUUGAAAGCCGUAAUCCUUACGGGCUGUUGGCUGCAGAGGAUCAUAAACCAAAUCUGGUUUCGGAUUCGCU
.....(((((((.(..((((.(..(....)..).((((((((...)))).)))))))).))))))))((((..((((((....))))))..)))).... (-21.86 = -22.06 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:07:19 2006