Locus 6141

Sequence ID X_DroMel_CAF1
Location 15,706,700 – 15,706,820
Length 120
Max. P 0.964538
window9990

overview

Window 0

Location 15,706,700 – 15,706,820
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -36.10
Consensus MFE -34.55
Energy contribution -34.67
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.61
Structure conservation index 0.96
SVM decision value 1.57
SVM RNA-class probability 0.964538
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15706700 120 - 22224390
CGCACCGAAACCAGGACAUCCUGCCAGCAGGUCCCGAAAAUAUACACAGCGUGCCGAUAAUAUUGCACGAUGGACUGAGAAUAUCGUUCCACGAAAGACCAGAUCACAAUCGGUGCACAA
.(((((((...((((....))))......((((.((.............(((((..........))))).((((.(((.....))).))))))...)))).........))))))).... ( -36.40)
>DroSec_CAF1 17886 120 - 1
CGCACCGAAACCAGGACAUCCUGCCAGCAGGUCCCGAAAAUAUACACAGCGUGCCGACAAUAUUGCACGAUGGACUGAGAAUAUCGUUCCACGAAAGACCAGAUCACAAUCGGUGCACAA
.(((((((...((((....))))......((((.((.............(((((..........))))).((((.(((.....))).))))))...)))).........))))))).... ( -36.40)
>DroEre_CAF1 17786 120 - 1
CGCUCCGAAACCAGGACAUCCUGCCAGCAGGUCCCGAAAAUAUACACAGCGUGCCGAUAAUAUUGCACGGUGGACUGAGAAUAUCGUUCCGCGAAAGACCAGAUCACAAUCGGUGCACAA
.((.((((...((((....))))......((((................(((((..........)))))(((((.(((.....))).)))))....)))).........)))).)).... ( -35.50)
>consensus
CGCACCGAAACCAGGACAUCCUGCCAGCAGGUCCCGAAAAUAUACACAGCGUGCCGAUAAUAUUGCACGAUGGACUGAGAAUAUCGUUCCACGAAAGACCAGAUCACAAUCGGUGCACAA
.(((((((...((((....))))......((((.((.............(((((..........))))).((((.(((.....))).))))))...)))).........))))))).... (-34.55 = -34.67 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:21 2006