Locus 6135

Sequence ID X_DroMel_CAF1
Location 15,701,612 – 15,701,718
Length 106
Max. P 0.950674
window9976 window9977

overview

Window 6

Location 15,701,612 – 15,701,718
Length 106
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 83.29
Mean single sequence MFE -25.30
Consensus MFE -20.06
Energy contribution -19.86
Covariance contribution -0.21
Combinations/Pair 1.24
Mean z-score -2.52
Structure conservation index 0.79
SVM decision value 1.40
SVM RNA-class probability 0.950674
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15701612 106 + 22224390
-------UAAUGAAAUUGAUGAAUAUGUAUUUAUGUGGGGAUGU------UAGGAUUUUUCCAUUUGCAUUUACUUAUGUACAUAUUUAUGUACAAUAUAACCAAUUGAUGUUCAUCA-G
-------.........((((((((((.((......(((((((((------..(((....)))....)))))).....(((((((....)))))))......)))..))))))))))))-. ( -25.00)
>DroSec_CAF1 12761 113 + 1
-------UAAUGAAAUUGAUGAAUAUAUAUUUAUGUAGGGAUGUACGUAUAAGGAUUUUUCCAUUUGCAUUUACAUAUGUACGUAUUUAUGUACAAUAUAACCAAUUGAUGUUCAUCAAG
-------........(((((((((((.....((((((..((((((.((....(((....))))).))))))))))))(((((((....))))))).............))))))))))). ( -27.40)
>DroEre_CAF1 12475 119 + 1
GUACAUAUAUUUAAAUUGAUGAAUACGUAUUUAUGUUGGGAUGUACAUAUAAGGAUUUUUCCAUUUGCAUUUAUGU-CAUAUAUAUUUAUGUACAAUAUGACCAAUUGAUGUUCAUCAAG
...............((((((((((((...((((((((..............(((....)))...(((((..((((-.....))))..))))))))))))).....)).)))))))))). ( -23.50)
>consensus
_______UAAUGAAAUUGAUGAAUAUGUAUUUAUGUAGGGAUGUAC_UAUAAGGAUUUUUCCAUUUGCAUUUACAUAUGUACAUAUUUAUGUACAAUAUAACCAAUUGAUGUUCAUCAAG
...............((((((((((((((..((((((.(.(((((.......(((....))).........))))).).))))))..))))).((((.......))))..))))))))). (-20.06 = -19.86 +  -0.21)

alignment

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secondary structure

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dotplot

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Window 7

Location 15,701,612 – 15,701,718
Length 106
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 83.29
Mean single sequence MFE -17.90
Consensus MFE -11.93
Energy contribution -11.93
Covariance contribution 0.00
Combinations/Pair 1.08
Mean z-score -2.35
Structure conservation index 0.67
SVM decision value 0.68
SVM RNA-class probability 0.821794
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15701612 106 - 22224390
C-UGAUGAACAUCAAUUGGUUAUAUUGUACAUAAAUAUGUACAUAAGUAAAUGCAAAUGGAAAAAUCCUA------ACAUCCCCACAUAAAUACAUAUUCAUCAAUUUCAUUA-------
.-(((((((......(((.((((..(((((((....)))))))...))))...)))..(((....)))..------.....................))))))).........------- ( -16.50)
>DroSec_CAF1 12761 113 - 1
CUUGAUGAACAUCAAUUGGUUAUAUUGUACAUAAAUACGUACAUAUGUAAAUGCAAAUGGAAAAAUCCUUAUACGUACAUCCCUACAUAAAUAUAUAUUCAUCAAUUUCAUUA-------
.((((((((..(((.(((.(((((((((((........))))).))))))...))).)))..............(((......)))...........))))))))........------- ( -17.80)
>DroEre_CAF1 12475 119 - 1
CUUGAUGAACAUCAAUUGGUCAUAUUGUACAUAAAUAUAUAUG-ACAUAAAUGCAAAUGGAAAAAUCCUUAUAUGUACAUCCCAACAUAAAUACGUAUUCAUCAAUUUAAAUAUAUGUAC
.((((((((.........((((((((((......))).)))))-)).....(((....(((....)))...(((((........))))).....)))))))))))............... ( -19.40)
>consensus
CUUGAUGAACAUCAAUUGGUUAUAUUGUACAUAAAUAUGUACAUAAGUAAAUGCAAAUGGAAAAAUCCUUAUA_GUACAUCCCAACAUAAAUACAUAUUCAUCAAUUUCAUUA_______
..(((((((.((..(((.((.....(((((.........(((....))).........(((....)))......))))).....))...)))..)).)))))))................ (-11.93 = -11.93 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:10 2006