Locus 6132

Sequence ID X_DroMel_CAF1
Location 15,699,505 – 15,699,602
Length 97
Max. P 0.928475
window9972 window9973

overview

Window 2

Location 15,699,505 – 15,699,602
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 84.89
Mean single sequence MFE -18.74
Consensus MFE -14.91
Energy contribution -14.03
Covariance contribution -0.88
Combinations/Pair 1.20
Mean z-score -1.87
Structure conservation index 0.80
SVM decision value 0.30
SVM RNA-class probability 0.677678
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15699505 97 + 22224390
CCGUGCAAAUUUAAUUACGUAUACGUUAUGUUUAUAUAUAUGUAUGUAUAUGCCACGCGAUCAUAUAUAUGCGCACAUAUAUGCGCGUAAUUUGAUU
.((((............((((((((((((((......))))).))))))))).)))).(((((.((.((((((((......)))))))))).))))) ( -24.02)
>DroEre_CAF1 10256 84 + 1
CCGUGUAAAUUUAAUUACGUAUACGUUAUGUUUAUAUAUACGAGUAUAUAUGCCACGCGAUCAUAUAUAUGCGCAUAUAUGU-------------AU
.(((((..........(((((.....))))).((((((((....))))))))..)))))...((((((((....))))))))-------------.. ( -16.10)
>DroYak_CAF1 10375 84 + 1
CCGUGUAAAUUUAAUUACGUAUACGUUAUGUUUAUAUAUACGAGUAUAUAUGCCACGCGAUCAUAUAUAUGCGCAUAUAUGU-------------AU
.(((((..........(((((.....))))).((((((((....))))))))..)))))...((((((((....))))))))-------------.. ( -16.10)
>consensus
CCGUGUAAAUUUAAUUACGUAUACGUUAUGUUUAUAUAUACGAGUAUAUAUGCCACGCGAUCAUAUAUAUGCGCAUAUAUGU_____________AU
..((((...........((((((..(.......)..)))))).(((((((((.........)))))))))))))....................... (-14.91 = -14.03 +  -0.88)

alignment

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secondary structure

Postscript

dotplot

Postscript

Window 3

Location 15,699,505 – 15,699,602
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 84.89
Mean single sequence MFE -18.70
Consensus MFE -15.21
Energy contribution -15.43
Covariance contribution 0.23
Combinations/Pair 1.08
Mean z-score -2.51
Structure conservation index 0.81
SVM decision value 1.19
SVM RNA-class probability 0.928475
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15699505 97 - 22224390
AAUCAAAUUACGCGCAUAUAUGUGCGCAUAUAUAUGAUCGCGUGGCAUAUACAUACAUAUAUAUAAACAUAACGUAUACGUAAUUAAAUUUGCACGG
.....((((((((((((....))))))(((((((((.....(((.......))).)))))))))...............))))))............ ( -20.10)
>DroEre_CAF1 10256 84 - 1
AU-------------ACAUAUAUGCGCAUAUAUAUGAUCGCGUGGCAUAUAUACUCGUAUAUAUAAACAUAACGUAUACGUAAUUAAAUUUACACGG
..-------------..(((((((((..((((((((.((....))))))))))..)))))))))........(((....((((......))))))). ( -18.00)
>DroYak_CAF1 10375 84 - 1
AU-------------ACAUAUAUGCGCAUAUAUAUGAUCGCGUGGCAUAUAUACUCGUAUAUAUAAACAUAACGUAUACGUAAUUAAAUUUACACGG
..-------------..(((((((((..((((((((.((....))))))))))..)))))))))........(((....((((......))))))). ( -18.00)
>consensus
AU_____________ACAUAUAUGCGCAUAUAUAUGAUCGCGUGGCAUAUAUACUCGUAUAUAUAAACAUAACGUAUACGUAAUUAAAUUUACACGG
.................(((((((((..((((((((.((....))))))))))..)))))))))........(((....((((......))))))). (-15.21 = -15.43 +   0.23)

alignment

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secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:06 2006