Locus 6131

Sequence ID X_DroMel_CAF1
Location 15,696,876 – 15,696,986
Length 110
Max. P 0.686907
window9971

overview

Window 1

Location 15,696,876 – 15,696,986
Length 110
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 96.18
Mean single sequence MFE -24.88
Consensus MFE -21.94
Energy contribution -23.38
Covariance contribution 1.44
Combinations/Pair 1.04
Mean z-score -1.79
Structure conservation index 0.88
SVM decision value 0.32
SVM RNA-class probability 0.686907
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15696876 110 - 22224390
CAUUUAAUAUUUACCACAGAGACGGUAACACCGAAUCAUAUACAUUAGAUCACAAUGUAGAUGAUGGGUGAAACACUAUCCGCAGACUGCGCAACCGUUGACCUGACACC
................(((.((((((..((((..(((((.((((((.......)))))).))))).))))..........(((.....)))..))))))...)))..... ( -28.10)
>DroSec_CAF1 7884 110 - 1
CAUUUAAUAUUUACCACAGAGGCGGUAACACCGAAUCAUAUACAUUAGAUCACAAUGUAGAUGAUGGGUGAAACACUAUCCGCAGACUGCGCAACCGUUGACCUGACACC
................(((.((((((..((((..(((((.((((((.......)))))).))))).))))..........(((.....)))..))))))...)))..... ( -27.60)
>DroEre_CAF1 7835 105 - 1
CAUUUAAUAUUAACCACAGAG---GUAACACCGAAUCAUAUACAUUAGAUCACAAUGUAGAUGAUGGGUGAAACACUAUCCGCAGACUGCGCAACCGUUGACCUGA--CC
................(((.(---((..((((..(((((.((((((.......)))))).))))).))))..........(((.....)))..))).)))......--.. ( -21.90)
>DroYak_CAF1 7860 105 - 1
CAUUUAAUAUUAACCACAGAG---GUAACACCGAAUCAUAUACAUUAGAUCACAAUGUAGAUGAUGGGUGAAACACUAUCCGCAGACUGCGCAACCGUUGACCUGA--CC
................(((.(---((..((((..(((((.((((((.......)))))).))))).))))..........(((.....)))..))).)))......--.. ( -21.90)
>consensus
CAUUUAAUAUUAACCACAGAG___GUAACACCGAAUCAUAUACAUUAGAUCACAAUGUAGAUGAUGGGUGAAACACUAUCCGCAGACUGCGCAACCGUUGACCUGA__CC
................(((.((((((..((((..(((((.((((((.......)))))).))))).))))..........(((.....)))..))))))...)))..... (-21.94 = -23.38 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:05 2006