| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,661,799 – 15,661,912 |
| Length | 113 |
| Max. P | 0.709733 |
| Location | 15,661,799 – 15,661,912 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.77 |
| Mean single sequence MFE | -14.72 |
| Consensus MFE | -12.83 |
| Energy contribution | -12.58 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.709733 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15661799 113 + 22224390 UGC------UUCGGUCCUAAAGCAAAAUUUAAUUUGGUUUUCAAAAAAAGGUCAAAUAGUAAAA-AUAAUAAAAAACCAACCUUUCGACACCCUCGAUACUUUAACCGACUGACAAUAAC ...------.((((((.(((((...........((((((((.......................-.......))))))))....((((.....))))..)))))...))))))....... ( -14.81) >DroSim_CAF1 1499 108 + 1 UGC------UUCAGUCCUAAAGCGAAAUUCAAUUUGGUUUUCGAAUUAA-----CUUACUGAAA-AUAAUAAAAAACCAACCUUUCGACACCCUCAAUACUUUAACCGACUGACAAUAAC ...------.((((((.((((((((((......((((((((...((((.-----..........-.))))..))))))))..)))))............)))))...))))))....... ( -13.40) >DroEre_CAF1 2203 109 + 1 UGCUU----UUCAGUCCUAAAGCAAAAUUCAAUUUGGUUUUCGAGUUAU-----CUUACUAAAACU--AAAAGAAACCAACCUUUCGAAACCCUCAAUACUUUAACCGACUGACAAUAAC .....----.((((((.(((((..........(((((((((..(((...-----...)))))))))--))).((((......)))).............)))))...))))))....... ( -16.70) >DroYak_CAF1 1625 115 + 1 UGCCUAUGCUUCAGUCCUAGAGCGAAAUUCAAUUUGGUUUUCAAAUAAA-----CCUACUUAAACAUAAAAAAAAACCAACCUUUCGACACCCUUGAUACUUUAACCGACUGACAAUAAC ..........((((((.((((((((((......((((((((........-----..................))))))))..))))).((....))...)))))...))))))....... ( -13.97) >consensus UGC______UUCAGUCCUAAAGCAAAAUUCAAUUUGGUUUUCAAAUAAA_____CUUACUAAAA_AUAAAAAAAAACCAACCUUUCGACACCCUCAAUACUUUAACCGACUGACAAUAAC ..........((((((.(((((...........((((((((...............................))))))))....((((.....))))..)))))...))))))....... (-12.83 = -12.58 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:34 2006