Locus 6104

Sequence ID X_DroMel_CAF1
Location 15,647,696 – 15,647,805
Length 109
Max. P 0.557293
window9918

overview

Window 8

Location 15,647,696 – 15,647,805
Length 109
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 86.24
Mean single sequence MFE -18.05
Consensus MFE -13.24
Energy contribution -13.50
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.73
SVM decision value 0.05
SVM RNA-class probability 0.557293
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15647696 109 + 22224390
CAACGGACCCGUUCAAAGACGCUGCCAUAACUUGUACACAUGUAUAAUAUAAAUUAACAAACCGCUCCAUCGUGUUAUCAACGACAU----AGAUAAUAACACGCCCAGCGCA------
.((((....))))....(.(((((.......((((((....)))))).......................((((((((...(.....----.)...))))))))..)))))).------ ( -20.30)
>DroSec_CAF1 4216 109 + 1
CAACGGGCCCGCUCAAAGACGCUGCCAUAACUUGUACACAUGUAUAAUAUAAAUUAACAAACCGCUCCAUCGUGUUAUCAACGACAU----AGAUAAUAACACGCCCAGCGCA------
.....(((..((........)).))).....((((((....))))))...............((((....((((((((...(.....----.)...))))))))...))))..------ ( -20.10)
>DroEre_CAF1 4102 101 + 1
--------UCGCCCAAAGACGCUGCUAUAACAUCUACACAUGUAUAAUAAAAAUUAACAAACCGCUCCAUCGUGUUAUCAACGACAU----AGAUAAUAACACGCCCAGCACA------
--------............((((.....((((......))))...........................((((((((...(.....----.)...))))))))..))))...------ ( -13.10)
>DroYak_CAF1 4656 111 + 1
--------UCGCCCAAAGACGCUGCCAUAACUUGUACACAUGUAUAAUAUAAAUUAACAAACCGCUCCAUCGUGUUAUCAACGACAUAUGUAGAUAAUAACACGCCCAGCACUCUGUGC
--------..((.((.((..((((.......((((((....)))))).......................((((((((.....((....)).....))))))))..)))).)).)).)) ( -18.70)
>consensus
________CCGCCCAAAGACGCUGCCAUAACUUGUACACAUGUAUAAUAUAAAUUAACAAACCGCUCCAUCGUGUUAUCAACGACAU____AGAUAAUAACACGCCCAGCACA______
....................((((........(((((....)))))........................((((((((..................))))))))..))))......... (-13.24 = -13.50 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:16 2006