Locus 6101

Sequence ID X_DroMel_CAF1
Location 15,645,495 – 15,645,585
Length 90
Max. P 0.543794
window9913

overview

Window 3

Location 15,645,495 – 15,645,585
Length 90
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 80.45
Mean single sequence MFE -23.52
Consensus MFE -16.12
Energy contribution -16.38
Covariance contribution 0.25
Combinations/Pair 1.05
Mean z-score -1.58
Structure conservation index 0.69
SVM decision value 0.02
SVM RNA-class probability 0.543794
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15645495 90 + 22224390
CUGGAGAUCGCAGUCAC-ACACAGAUCC-AUUGAUCUGAUAAAGGACAUGACUUCCGUUGCAAAAUUGUGCCCAGAGUUAUGGCACCCGAAA
..((((.(((..(((..-...((((((.-...))))))......))).))).))))...........(((((.........)))))...... ( -21.30)
>DroSec_CAF1 1984 91 + 1
CUGGAGGUCACAGUCACCACACAGAUCC-AUCGAUCUGAUUAAGGACCUGACUUCCGUUGCAAAAUUGUGGCCAGAGUUAUGGCACCCGAAA
..((((((((..(((......((((((.-...))))))......))).)))))))).........(((.(((((......)))).).))).. ( -29.00)
>DroEre_CAF1 1965 80 + 1
CUGGGG-U-----------CACAGAUCCAAACCAUCUGAUAAAGGACCUGACUUCCGUUGCGAAAUCGUGGCCAGAGUUAUGGCACCCGAAA
.(((((-(-----------(((((((.......)))))..........((((((..((..((....))..))..)))))))))).))))... ( -24.80)
>DroYak_CAF1 2123 73 + 1
-------------------CACAGAUCCGAACCAUCUGAUAAAGGACCUGACUUCCGUUGCGAAAUCGUGGCCAGAGUUAUGGCACCCGAAA
-------------------..(((((.......))))).....((.((((((((..((..((....))..))..)))))).))...)).... ( -19.00)
>consensus
CUGGAG_U___________CACAGAUCC_AACCAUCUGAUAAAGGACCUGACUUCCGUUGCAAAAUCGUGGCCAGAGUUAUGGCACCCGAAA
.....................((((((.....)))))).....((.((((((((..(..(((....)))..)..)))))).))...)).... (-16.12 = -16.38 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:12 2006