Locus 6093

Sequence ID X_DroMel_CAF1
Location 15,626,226 – 15,626,323
Length 97
Max. P 0.860232
window9898

overview

Window 8

Location 15,626,226 – 15,626,323
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 69.69
Mean single sequence MFE -38.78
Consensus MFE -11.91
Energy contribution -9.25
Covariance contribution -2.66
Combinations/Pair 1.71
Mean z-score -2.20
Structure conservation index 0.31
SVM decision value 0.82
SVM RNA-class probability 0.860232
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15626226 97 - 22224390
CCAGUUUGUUGGCAAUGGAGGUGGACGCCUCAUCGCUGGCUCCAUAAUCGGCUGUGGUGAUGCGCUCCACCUCCUGGGAAUUGCCGAUGAAGGAUUC
((..((..((((((((((((((((((((.(((((((.((((........))))))))))).))).))))))))).....))))))))..)))).... ( -48.70)
>DroVir_CAF1 3637 97 - 1
UGCGCUUAAUGGCAGCAGCGCUGACGCUCUCCUCCUCGCAUUCGCUGCUGGCUUCGGUGGCACGCAGUGCCUCCCGCGCAUUGCCAAUGAAUGAUUC
(((((.....(.((((((((..((.((..........)).)))))))))).)...((.(((((...))))).)).)))))................. ( -34.40)
>DroGri_CAF1 3765 97 - 1
UGCGCUUGAUGGCAGCAACGCUGACGCUUUCCUCAUCGCACUCGCUGCUUGCCUCUGUGGCACGCAGCGCCUCCCGCGCAUUGCCAAUGAACGAUUC
(((((..((.(((.....((.(((........))).)).....(((((.((((.....)))).))))))))))..)))))................. ( -33.20)
>DroEre_CAF1 1469 97 - 1
CCAGUUUGUUGGCAAUGGAGGUGGCCGCCUCAUCGCUGGCUCCAUAGUCGGCGUUGGUGAUGCGCUCCACCUCCUGGGAAUUGCCGAUAAAGGACUC
((..((((((((((((((((((((.(((.((((((((((((....))))))))...)))).)))..)))))))).....)))))))))))))).... ( -47.50)
>DroYak_CAF1 1404 97 - 1
CCAGUUUGUUGGCAAUCGAGGUGGCCGCCUCAUCGCUGGAUCCGUAGUCGGCGGUUGUGAUGCGCUCCACCUCCUGGGAAUUGCCGAUGAAGGAUUC
((..((..((((((((((((((((.(((.((((.((((...(((....))))))).)))).)))..)))))))....).))))))))..)))).... ( -39.50)
>DroMoj_CAF1 3425 97 - 1
UGCGCUUGAUGGCAGCUACGCUGACGGUCUCCUCCUCGCAUACGCUGUUCGCCUCGGUGGCACGCAGUGCCUCCCGCGCAUUCCCAAUGAACGAUUC
(((((..((.((((((((.((.((.((......)))))).)).)))....)))))((.(((((...))))).)).)))))................. ( -29.40)
>consensus
CCAGCUUGAUGGCAACAGAGCUGACCGCCUCAUCGCCGCAUCCGCAGUCGGCCUCGGUGACACGCACCACCUCCCGCGAAUUGCCAAUGAAGGAUUC
.........((((((...............................(((.((....))))).....(((.....)))...))))))........... (-11.91 =  -9.25 +  -2.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:59 2006