| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,684,073 – 1,684,174 |
| Length | 101 |
| Max. P | 0.567723 |
| Location | 1,684,073 – 1,684,174 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 81.63 |
| Mean single sequence MFE | -23.67 |
| Consensus MFE | -17.17 |
| Energy contribution | -17.50 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1684073 101 - 22224390 GCUCAUCUGAAUAAGGUGGCUUCGUUUCGCUGUUGCAAGCUGUUAAAAGCUGUUGCAAGCUGUUACAAGCUGUUGCAAGCGACCUGUCUCCCAAUAAUCAA ((.(((((.....)))))))......(((((..((((((((((....((((......))))...)).))))..)))))))))................... ( -26.90) >DroSec_CAF1 24407 81 - 1 GUUCAUCUGAAUAAGGUGGCUUUAUUUCGCUGUUGCA--------------------AGCUGUUACAAGCUGUUGCAAGCGACCUGUCCCCCAACAAUCAA ((((....))))..((.((...((..(((((..((((--------------------((((......))))..)))))))))..))..))))......... ( -19.50) >DroSim_CAF1 18235 81 - 1 GUUCAUCUGAAUAAGGUGGCUUCGUUUCGCUGUUGCA--------------------AGCUGUUACAAGCUGUUGCAAGCCACCUGUCCCCCAACAAUCAA (((.....((...(((((((((.((..(((....)).--------------------((((......)))))..))))))))))).))....)))...... ( -24.60) >consensus GUUCAUCUGAAUAAGGUGGCUUCGUUUCGCUGUUGCA____________________AGCUGUUACAAGCUGUUGCAAGCGACCUGUCCCCCAACAAUCAA ........((...((((.((((.((..(((....)).....................((((......)))))..)))))).)))).))............. (-17.17 = -17.50 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:18 2006