Locus 6053

Sequence ID X_DroMel_CAF1
Location 15,535,694 – 15,535,790
Length 96
Max. P 0.500000
window9837

overview

Window 7

Location 15,535,694 – 15,535,790
Length 96
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 81.49
Mean single sequence MFE -11.63
Consensus MFE -7.36
Energy contribution -8.22
Covariance contribution 0.86
Combinations/Pair 1.11
Mean z-score -1.51
Structure conservation index 0.63
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15535694 96 + 22224390
CGGGUGAUUUCACCACCCGUCUAACUAA--AAUAUAUCAAAUAAAAUCAACAAUCAUUGCAAUAGCGCAUUAAAAAUAAAUUAAAUUCCUACUACGGC
((((((.......)))))).........--...........................(((......)))............................. ( -11.40)
>DroSim_CAF1 12765 96 + 1
CGGGUGAUUUCACCACCCGUCUAACUAA--AAUUUAUCAAAUAAAAUCAACAAUCAUUGCAAAAGCGCAUUAAAAAUUAAUUAAAUUCCUACUACGGC
((((((.......)))))).........--...........................(((......)))............................. ( -11.40)
>DroEre_CAF1 13202 96 + 1
CGGGUGAUUUCACCACCCGUCUAACUAA--AAUAUAUAAAAUAAAAUCAACAAUCUUUGCAAUAGCGCAUUAAAAAAUAAUUAAAUCCUUACUACGGC
((((((.......)))))).........--...........................(((......)))............................. ( -11.40)
>DroYak_CAF1 11727 96 + 1
CGGGUGAUUUCACCACCCGUCUAACUAA--AAUAUAUCAAAUAAAAUCAACAAUCUUUGCAAUAACGCAUUAAAAAAUAAUCAAAAUCCUACUACGGC
((((((.......)))))).........--...........................(((......)))............................. ( -11.40)
>DroAna_CAF1 16523 90 + 1
GGGGC-UUCUCAGC-CCCGUCUAACUAA--AA-AUACAAAAUAAAGUCAACAAUG-UUGCAAUAGCGCAU--AAAAUUAAUUAAAAUUCUACUACGGA
(((((-(....)))-)))..........--..-...................(((-(.((....))))))--...................(....). ( -15.00)
>DroPer_CAF1 44261 95 + 1
CGGGCACGCCCCUCCGCCGUAUAACUAAUCAAAAUACAAAAUAAAAUCAACAAU-AUUGCAAUAGCGCGU--ACAAAUAAUUAAUAAUCUAAUAUAUU
.(((....)))...(((.((((...........)))).................-...((....))))).--.......................... (  -9.20)
>consensus
CGGGUGAUUUCACCACCCGUCUAACUAA__AAUAUAUAAAAUAAAAUCAACAAUCAUUGCAAUAGCGCAUUAAAAAAUAAUUAAAAUCCUACUACGGC
((((((.......))))))......................................(((......)))............................. ( -7.36 =  -8.22 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:01 2006