| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,526,545 – 15,526,659 |
| Length | 114 |
| Max. P | 0.978980 |
| Location | 15,526,545 – 15,526,659 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.29 |
| Mean single sequence MFE | -26.97 |
| Consensus MFE | -25.09 |
| Energy contribution | -25.53 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.978980 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15526545 114 - 22224390 UUGGACAUGCCACAAAUGCAUUAGAACU--AACUCGAUAUGCAAACA----UAUUUGUAUAAUUGAAAACUGUCAACGUUUGACAAAUUUCCCGUCGUAAAAAAAACGGCGGCGUGUAAC ....(((((((((((((((((..((...--...))...)))))....----..)))))......((((..(((((.....)))))..))))..(((((.......))))))))))))... ( -28.70) >DroSim_CAF1 97632 117 - 1 UGGGACAUGCCACAAAUGCAUUAGAACU--CACUCGAUAUGCAAACAUACAUACUUGCAUAAUUGAAAACUGUCAACGUUUGACAAAUUUCCCGUCGUAAAA-AAACGGCGGCGUGUAAC .(..(((((((............(((..--...(((((((((((..........)))))).)))))....(((((.....)))))...)))..(((((....-..))))))))))))..) ( -29.30) >DroYak_CAF1 99639 109 - 1 CAGGACAUGCCACAAAUGCAUUAGAACACACACUCGAUAUGCAAACAU----------AUAAUUGAAAACUGUCAACGUUUGACAAAUUUCCCGUCGUAAAA-AAGCAGCGGCGGGUAAC ..((.....)).....(((((..((........))...))))).....----------............(((((.....))))).....((((((((....-.....)))))))).... ( -22.90) >consensus UAGGACAUGCCACAAAUGCAUUAGAACU__CACUCGAUAUGCAAACAU___UA_UUG_AUAAUUGAAAACUGUCAACGUUUGACAAAUUUCCCGUCGUAAAA_AAACGGCGGCGUGUAAC ....(((((((.....(((((..((........))...))))).....................((((..(((((.....)))))..))))..(((((.......))))))))))))... (-25.09 = -25.53 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:58 2006