| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,488,284 – 15,488,404 |
| Length | 120 |
| Max. P | 0.956448 |
| Location | 15,488,284 – 15,488,404 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.67 |
| Mean single sequence MFE | -42.70 |
| Consensus MFE | -37.84 |
| Energy contribution | -37.44 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.956448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15488284 120 + 22224390 GAUAUGGAGGAUUCCCUCCUUCUCUCAGCAACAGCUGUAAGUCACGGAGCGCCCAUUGUGCGAUCGCUUGAAACCCGAUCAGGCUUUCGGGCGAUCCAGCCAUGGAAAUGCAAGGAUGUU .....(((((....)))))..((..((((....))))..)).......(((.((((.((..((((((((((((.((.....)).))))))))))))..)).))))...)))......... ( -41.50) >DroSec_CAF1 48511 120 + 1 GAUGUGGAGGAUUCCCUCCUUCUCGCAGCAACAGCUGUAAGUCACGGAGCGCCCAUUGUGCGAUCGCUUGAAACCCGAUCAGGCUUUCGGGCGAUCCAGCCAUGGAAAUGCACGGAUGUA ((...(((((....)))))...))(((((....)))))..(((.((..(((.((((.((..((((((((((((.((.....)).))))))))))))..)).))))...))).)))))... ( -46.80) >DroSim_CAF1 60748 119 + 1 -AUGUGGAGGAUUCCCUCCUUCUAGCAGCAACAGCUGUAAGUCACGGAGCGCCCAUUGUGCGAUCGCUUGAAACCCGAUCAGGCUUUCGGGCGAUCCAGCCAUGGAAAUGCAAGGAUGUA -.((((((((....)))))((((((((((....))))).......((.((((.....))))((((((((((((.((.....)).))))))))))))...)).)))))..)))........ ( -44.70) >DroEre_CAF1 49913 120 + 1 GAUGUGAAGGAUUCCCUCCUUCUCUCAGAAACAGCUGUAAGUCACGGAGCGCCCAUUGUGCGAUCGCUUGAAACCCGAUCAGGCUUUCGGGCGAUCCAGCCAAGGAAAUGCGAGGAUGUA ((.(.((((((.....)))))).)))....(((.(((((..((..((.((((.....))))((((((((((((.((.....)).))))))))))))...))...))..))).))..))). ( -39.50) >DroYak_CAF1 48757 120 + 1 GAUGUGAAGGAUUCCCUCCUUCUCACCGAAACAGCUGUAAGUCACGGAGCGCCCAUUGUGCGAUCGCUUGAAACCCGAUCAGGCUUUCGGGCGAUCCAGCCAUGGAAAUGCAAGGAUGUA ..((.((((((.....)))))).))((......((((...........((((.....))))((((((((((((.((.....)).))))))))))))))))(((....)))...))..... ( -41.00) >consensus GAUGUGGAGGAUUCCCUCCUUCUCGCAGCAACAGCUGUAAGUCACGGAGCGCCCAUUGUGCGAUCGCUUGAAACCCGAUCAGGCUUUCGGGCGAUCCAGCCAUGGAAAUGCAAGGAUGUA .....((((((.....))))))........(((.(((((..((..((.((((.....))))((((((((((((.((.....)).))))))))))))...))...))..)))).)..))). (-37.84 = -37.44 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:26 2006