Locus 6017

Sequence ID X_DroMel_CAF1
Location 15,443,728 – 15,443,820
Length 92
Max. P 0.971892
window9781

overview

Window 1

Location 15,443,728 – 15,443,820
Length 92
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 93.21
Mean single sequence MFE -23.80
Consensus MFE -20.68
Energy contribution -21.36
Covariance contribution 0.68
Combinations/Pair 1.04
Mean z-score -1.76
Structure conservation index 0.87
SVM decision value 1.68
SVM RNA-class probability 0.971892
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15443728 92 - 22224390
CAUGUUGUUGAUCCCG--CACCUGGUAAUAUGACAUGAAAUUCGAGACUGAUUUAUCAAAUCAUUCUCACGUGCUCGGGAUUUCCUUGGAAAUC
......(..(((((((--(((...((......)).........((((.(((((.....))))).))))..))))..))))))..)......... ( -21.50)
>DroSec_CAF1 4644 92 - 1
CAUGGUGUUGAUCCCG--CACCUGGUAAUAUGACAUGAAAUUCGAGACUGAUUUAUCAAAUCAUUCUCACGUGCUCGGGAUUUCCGUGGAAACC
(((((....(((((((--(((...((......)).........((((.(((((.....))))).))))..))))..)))))).)))))...... ( -27.20)
>DroSim_CAF1 4649 92 - 1
CAUGGUGUUGAUCCCG--CACCUGGUAAUAUGACAUGAAAUCCGAGACUGAUUUAUCAAAUCAUUCUCACGUGCUCGGGAUUUCCGUGGAAACC
(((((....(((((((--(((..((................))((((.(((((.....))))).))))..))))..)))))).)))))...... ( -27.59)
>DroEre_CAF1 7214 92 - 1
CAUGGUGUUGAUCCCA--CACCUGGUAAUAUGACAUGAAAUUCGAGACUGAUUUAUCAAAUCAUUCUCACGUGCUCGGGAUUUCUGUGGAAACC
((.(((((.......)--))))))........(((.(((((((((((.(((((.....))))).)))).((....))))))))))))(....). ( -23.20)
>DroYak_CAF1 4676 88 - 1
CAU------GAUCCCACACACCUGGUAAUAUGACAUGAUAUUCGAGACUGAUUUAUCAAAUCAUUCUCACGUGCUCGGGAUUUCUGUGGAAACC
...------....(((((..(((((((((((......))))..((((.(((((.....))))).))))...))).)))).....)))))..... ( -19.50)
>consensus
CAUGGUGUUGAUCCCG__CACCUGGUAAUAUGACAUGAAAUUCGAGACUGAUUUAUCAAAUCAUUCUCACGUGCUCGGGAUUUCCGUGGAAACC
(((((....((((((...(((...((......)).........((((.(((((.....))))).))))..)))...)))))).)))))...... (-20.68 = -21.36 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:10 2006