Locus 5995

Sequence ID	X_DroMel_CAF1
Location	15,400,185 – 15,400,297
Length	112
Max. P	0.568762

overview

Window 4

Location	15,400,185 – 15,400,297
Length	112
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	63.80
Mean single sequence MFE	-22.40
Consensus MFE	-11.43
Energy contribution	-12.68
Covariance contribution	1.25
Combinations/Pair	1.28
Mean z-score	-1.31
Structure conservation index	0.51
SVM decision value	0.07
SVM RNA-class probability	0.568762
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15400185 112 + 22224390
AAUGCCAAUGCAAUCAUUAUUGUAGCAUACUUUUCAGCUGCGACUUGAGCAGGAAAUGUA---UAGUUAUCCUGUUCCUAAAAUAUAUUAUUCCAAAUUGACUUUUUUAUAUUGG
....((((((.........(((((((..........)))))))...(((((((((((...---..))).))))))))................................)))))) ( -22.10)
>DroSec_CAF1 46092 94 + 1
AAUGCCAACGCAAUUAUUAUCGUAGCAUACUUUUCAGCUGCGACUUGCGCAGGAAAUGUG---UAGUUAUCCUGUUCCUAAAAAAUAUUUUUUCCAA------------------
.........((((......(((((((..........))))))).))))(((((((((...---..))).))))))......................------------------ ( -18.00)
>DroEre_CAF1 37413 110 + 1
AAGGCCAACACACUCAUUAUCGUAGCAUACUUUUCAGCUGCGCCUUCUACUACUAGUAG----UAGCAGUUCUUCGGAU-GAAAAUAACACUUCUAACAUACACGUGUGUAUUGG
....(((((((((.......((((((..........)))))).((.((((((....)))----))).)).((....)).-........................))))))..))) ( -24.70)
>DroYak_CAF1 40619 108 + 1
AAUGCCAACACAAUCAUUAUCGUAGCAUACUUUUCAGCUGCCACUGCUACAGGAAGUAGCUAAUGGCUAUCCUCUGGAG-GCAAGAAACACCUUCAA--UGCAC----GUAUUGU
.........(((((......(((.((((...........((((..(((((.....)))))...)))).......(((((-(.........)))))))--)))))----).))))) ( -24.80)
>consensus
AAUGCCAACACAAUCAUUAUCGUAGCAUACUUUUCAGCUGCGACUUCUACAGGAAAUAG____UAGCUAUCCUGUGCAU_AAAAAUAACACUUCCAA__UACAC____GUAUUGG
...................(((((((..........)))))))...(((((((((((........))).))))))))...................................... (-11.43 = -12.68 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:45 2006