Locus 5954

Sequence ID X_DroMel_CAF1
Location 15,347,811 – 15,347,902
Length 91
Max. P 0.636555
window9663

overview

Window 3

Location 15,347,811 – 15,347,902
Length 91
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.80
Mean single sequence MFE -36.03
Consensus MFE -18.35
Energy contribution -18.08
Covariance contribution -0.27
Combinations/Pair 1.18
Mean z-score -1.80
Structure conservation index 0.51
SVM decision value 0.21
SVM RNA-class probability 0.636555
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15347811 91 - 22224390
ACCAGC---------AGCAGGA---UCAG------GAGG---------CGUCGAA-UUUCAUCCAGGAGAUCAAGUGGUUUCAGGACUAUCAUGUGGAAA-UCUAUCUGGAUCUGCUGCU
...(((---------((((((.---((((------((((---------..((.(.-.....(((..((((((....)))))).)))........).))..-))).))))).))))))))) ( -30.64)
>DroPse_CAF1 10499 112 - 1
ACCAGGCCGAGUCGGAGGAGGAGUCGCAG------GAGGAGGGCGGCUCCUCGUA-UAUCUUUGAGGAGAUCAAGUGGUUCCACGACUACCACGUGGAGA-UCUACCUGGAUCUUCUGCU
....(((.(((....(.((((((((((..------.......)))))))))).).-...)))..((((((((..(((((((((((.......))))))).-.))))...))))))))))) ( -44.20)
>DroSec_CAF1 6763 92 - 1
ACCAGC---------AGCAGGA---UCAG------GAGGA--------CGUCGAACUUUCAUCCAGGAGAUCA-GUGGUUCCAGGACUAUCACGUGGGAAUUCUAUCUG-AUCUGCUGCU
...(((---------(((((.(---((((------(.(((--------..((((....))..(((.(.(((..-..((((....))))))).).)))))..))).))))-)))))))))) ( -32.10)
>DroYak_CAF1 8184 97 - 1
ACCAGC---------AGCAGGA---UCAGGAUCAGGAGG---------CGUCGAA-UUUCAUUCAGGAGAUCAAGUGGUUCCAGGACUAUCAUGUGGAAA-UCUAUCUGGAUCUGCUGCU
...(((---------((((((.---((((.....((((.---------((.(..(-((((......)))))...))).))))...........((((...-.)))))))).))))))))) ( -29.00)
>DroPer_CAF1 11146 112 - 1
ACCAGGCCGAGUCGGAGGAGGAGUCGCAG------GAGGAGGGCGGCUCCUCGUA-UAUCUUUGAGGAGAUCAAGUGGUUCCACGACUACCACGUGGAGA-UCUACCUGGAUCUUCUGCU
....(((.(((....(.((((((((((..------.......)))))))))).).-...)))..((((((((..(((((((((((.......))))))).-.))))...))))))))))) ( -44.20)
>consensus
ACCAGC_________AGCAGGA___UCAG______GAGGA________CGUCGAA_UUUCAUUCAGGAGAUCAAGUGGUUCCAGGACUAUCACGUGGAAA_UCUAUCUGGAUCUGCUGCU
...............((((((..............((.(((.....))).)).........((((((((((((.(((((.........))))).)))....))).))))))))))))... (-18.35 = -18.08 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:25 2006