Locus 5917

Sequence ID X_DroMel_CAF1
Location 15,253,703 – 15,253,821
Length 118
Max. P 0.804502
window9606

overview

Window 6

Location 15,253,703 – 15,253,821
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.96
Mean single sequence MFE -36.42
Consensus MFE -26.12
Energy contribution -26.50
Covariance contribution 0.38
Combinations/Pair 1.19
Mean z-score -2.09
Structure conservation index 0.72
SVM decision value 0.63
SVM RNA-class probability 0.804502
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15253703 118 + 22224390
AACUGAAACACGAGCUGCCUAAGAGUGACAGAGAUUGUCCUUCUGGGAAACCAAAAUCGGAAUCAAAAUCGGACUGC--UCUGUACGGAAAUGUAAGAGUGCAGCGUUGGCAGGAUGUGG
........((((..(((((.....(((.(((((...((((...(((....)))......((.......))))))..)--))))))).....((((....)))).....)))))..)))). ( -35.00)
>DroSec_CAF1 77084 110 + 1
AACUGAAACACGAGCUG--------UGACAGAGAUUGUCCUUCUGGGAAACCAAAAUCGGAAUCAAAAUCGGACUGC--UCUGUACGGAAAUGUACGAGUGCAGCGUUGGCAGGAUGUGG
..(((...((...((((--------(.((((((...((((...(((....)))......((.......))))))..)--))))).((........))...)))))..)).)))....... ( -32.30)
>DroEre_CAF1 69940 118 + 1
AACUGAAACACGAGCUGCCAAAGGGUGACACAGAUUGUCCUUCUGGGAAACCAAAAUCGGAAUCAAAAGCGGACUGC--GCUGCACGGAAGUGUGCGAGUGUAGCGUUGGCAGGAUGUGG
........((((..(((((((...((.((((.....((((...(((....))).....(....)......))))..(--((.((((....))))))).)))).)).)))))))..)))). ( -42.20)
>DroYak_CAF1 69039 120 + 1
AACUGAAACACGAGCAGCCAAAGAGUGACAGAGAAUGUCCUUCUGGGAAACCAAAAUCGGAAUCAAAAUCAGACUGCGCGCUGCACGGAAAUGUGCGAGUGUAGUAGGUGCAGGAUGUGG
........(((((....((..((((.((((.....)))).))))((....))......))..)).........(((((((((((((............)))))))..))))))...))). ( -36.20)
>consensus
AACUGAAACACGAGCUGCCAAAGAGUGACAGAGAUUGUCCUUCUGGGAAACCAAAAUCGGAAUCAAAAUCGGACUGC__GCUGCACGGAAAUGUACGAGUGCAGCGUUGGCAGGAUGUGG
..((((................(((.((((.....)))).)))(((....)))...)))).........((..((((..(((((((............)))))))....))))..))... (-26.12 = -26.50 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:35 2006