Locus 5911

Sequence ID X_DroMel_CAF1
Location 15,236,155 – 15,236,275
Length 120
Max. P 0.513664
window9594

overview

Window 4

Location 15,236,155 – 15,236,275
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.25
Mean single sequence MFE -26.68
Consensus MFE -21.68
Energy contribution -22.24
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -1.32
Structure conservation index 0.81
SVM decision value -0.04
SVM RNA-class probability 0.513664
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15236155 120 + 22224390
AAUCACGUUUAAAGUCCUGAAAUCAUUUAUAAAGCUUAAAGAGCUGAAUUCGGUAAGCUGAGGCGUCAUCAAUCAAUAACGAUUGUUGAAAACGGACGGACUGACGAUGAAGGUGAAAUU
..((((.((((.(((((...............((((((..(((.....)))..))))))..(...(((.(((((......))))).)))...)....))))).....)))).)))).... ( -29.60)
>DroSec_CAF1 56485 120 + 1
AAUCACGUUUAAAGUCCAGAAAUCAUUUAUAAAGCUUAAAGAGCUGAAUACGGUAAGCUGUGGCGCCAUCAAUCAAUAACGAUUGUUGAAAACGGACGGACCAACGAUGAAGGUGAAAUU
..((((.((((..((((................(((...((.((((....))))...))..)))..((.(((((......))))).)).....))))(......)..)))).)))).... ( -25.60)
>DroSim_CAF1 65294 120 + 1
AAUCACGUUUAAAGUCCUGAAAUCAUUUAUAAAGCUUAAAGAGCUGAAUUCGGUAAGCUGUGGCGCCAUCAAUCAAUAACGAUUGUUGAAAACGGACGGACCAGCGAUGAAGGUGAAAUU
..((((.((((.....(((((.(((........((((...))))))).)))))...((((.(.((((.((((.((((....))))))))....)).))..)))))..)))).)))).... ( -25.80)
>DroEre_CAF1 57574 120 + 1
AAUCACGUUUAAAGUCUGGAAAUCAUUUAUAAAGCUUUAAGAGCUCAAUUCGGUAAGCUAAAGCGUCAUCAAUCAAUAACGAUUGUUGAAAACGGACGGACCACCGAUGAAGGUGAAAUG
..((((.((((..(((((...............(((((...((((..........))))))))).(((.(((((......))))).)))...)))))((....))..)))).)))).... ( -28.40)
>DroYak_CAF1 57267 120 + 1
AAUCACGUUUAAAGUCUUGAAAUCAUUUAUAAAGCUUAAAGAGCCGAAUUCGUUAAGCCAAAGCGUCAUCAAUCAAUAACGAUUGUUGGAAAUGGACGGACCACCGACGAAGGUGAAAUU
..((((.(((............((((((.....((((((.(((.....))).)))))).......(((.(((((......))))).))))))))).(((....)))..))).)))).... ( -24.00)
>consensus
AAUCACGUUUAAAGUCCUGAAAUCAUUUAUAAAGCUUAAAGAGCUGAAUUCGGUAAGCUGAGGCGUCAUCAAUCAAUAACGAUUGUUGAAAACGGACGGACCAACGAUGAAGGUGAAAUU
..((((.((((..((((...............((((((..(((.....)))..)))))).......((.(((((......))))).)).....))))(......)..)))).)))).... (-21.68 = -22.24 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:25 2006