| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,232,686 – 15,232,806 |
| Length | 120 |
| Max. P | 0.914039 |
| Location | 15,232,686 – 15,232,806 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.67 |
| Mean single sequence MFE | -31.04 |
| Consensus MFE | -28.54 |
| Energy contribution | -27.62 |
| Covariance contribution | -0.91 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.914039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15232686 120 - 22224390 UACAUCGUAGAAAGUAGAACAGUUUGGCCAAAUUUAUGGCGUGUUGUUAACCUAAUUCAUAUCCUGUUAAUACUGGCACACUGGUUCGGUUGUUUCUAUUUUUUACUCUCCGAGGCGGAG ......((((((((((((((((....((((......))))(((((((((((..............)))))))...))))..........))).))))))))))))).(((((...))))) ( -30.44) >DroVir_CAF1 70104 120 - 1 UACAUCGUAGAGAGUAGAACAGUUUGGCCAAAUUUAUGGCGCGUUGUUAAUCUAAUUCAUAUCCUGUUAAUAUUGGCCCAUUGGUUCGGUUGUUUCUAUUUUUUGCUCUCCGAAGCGGAG ......(((((((((((((((((..(((((.....((((.((..(((((((..............)))))))...)))))))))))..)))).))))))))))))).(((((...))))) ( -31.74) >DroGri_CAF1 70989 120 - 1 UACAUCGUAGAGAGUAGAACAGUUUGGCCAAAUUUAUGGCGUGUUGUUAAUCUAAUUCAUAUCCUGUUAAUAUUGGCCCAUUGGUUCGGUUGUUUCUAUUUUUUACUCUCCGAAGCGGAG ......(((((((((((((((((..(((((.....((((.((..(((((((..............)))))))...)))))))))))..)))).))))))))))))).(((((...))))) ( -30.14) >DroWil_CAF1 78879 120 - 1 UACAUCGUAGAGAGUAGAACAGUUUGGCCAAAUUUAUGGCGCGUUGUUAAUCUAAUUCAUAUCCUGUUAAUAUUGGCCCAUUGGUUUGGCUGUUUCUAUUUUUUACUAUCCGAGGCGGAG ......(((((((((((((.....(((((((((..((((.((..(((((((..............)))))))...))))))..))))))))).)))))))))))))..((((...)))). ( -35.84) >DroMoj_CAF1 78723 120 - 1 UACAUCGUAGAGAGUAGAACAGUUUGGCCAAAUUUAUGGCGCGUUGUUAAUCUAAUUCAUAUCCUAUUAAUAUUGGCCCAUUGGUUCGGUUGUUUCUAUUUUUUGCUCUCCGAAGCGGAA ......(((((((((((((((((..(((((.....((((.((..(((((((..............)))))))...)))))))))))..)))).)))))))))))))..((((...)))). ( -29.64) >DroAna_CAF1 55049 120 - 1 UACAUCGUAGAGAGUAGGACAGUUUGGCCAAAUUUAUGGCGUGUUGUUAACCUAAUUCAUAUCCUGUUAAUACUGGCACACUGGUUCGGUUGUUUCUAUUUUUUACUAUCCGAGGCGGAG ......((((((((((((((((....((((......))))(((((((((((..............)))))))...))))..........))).)))))))))))))..((((...)))). ( -28.44) >consensus UACAUCGUAGAGAGUAGAACAGUUUGGCCAAAUUUAUGGCGCGUUGUUAAUCUAAUUCAUAUCCUGUUAAUAUUGGCCCAUUGGUUCGGUUGUUUCUAUUUUUUACUCUCCGAAGCGGAG ......(((((((((((((((((..(((((.....(((((.((.(((((((..............))))))).)))).))))))))..)))).)))))))))))))..((((...)))). (-28.54 = -27.62 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:19 2006