| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,189,854 – 15,189,946 |
| Length | 92 |
| Max. P | 0.708051 |
| Location | 15,189,854 – 15,189,946 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 78.97 |
| Mean single sequence MFE | -29.93 |
| Consensus MFE | -23.69 |
| Energy contribution | -23.67 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.708051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15189854 92 + 22224390 UCUUUCCGCCCUCCAGUGGCCAUGCCAUUUUCAUUCGGUUGGAGGGACCUU-UUGGUAGGGGGAAUCUCUGAAUUCGGAGGCUCAGCGGACUG ....((((((((((((((((...)))))...........))))))..((((-(....)))))((..(((((....)))))..)).)))))... ( -33.90) >DroSim_CAF1 9019 83 + 1 UCUUUCCGCCCUCCAGUGGCCAUGCCAUUUUCAUUCGGUCGGAGGGACCUUUUUGGUAGGGGGAAUCUCUGAAUUCGGAGGCU---------- ...((((.((((((((((((...)))))........((((.....))))....))).))))))))((((((....))))))..---------- ( -31.10) >DroYak_CAF1 9737 80 + 1 UCCCUCUGCCCUCCAGUGGCCAUGCCAUUUCCAUUCGGUUGUAGGGAACU-----GG-AAGGGAAUCUACGAAUUCGGAGGCUCGG------- ..((((..(((((((((..((.(((.....((....))..))).)).)))-----))-.))))......((....)))))).....------- ( -24.80) >consensus UCUUUCCGCCCUCCAGUGGCCAUGCCAUUUUCAUUCGGUUGGAGGGACCUU_UUGGUAGGGGGAAUCUCUGAAUUCGGAGGCUC_G_______ .......(((.(((((((((...)))))).........(((((((..(((((.....)))))...)))))))....))))))........... (-23.69 = -23.67 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:06 2006