Locus 5884

Sequence ID X_DroMel_CAF1
Location 15,154,362 – 15,154,453
Length 91
Max. P 0.985929
window9555 window9556

overview

Window 5

Location 15,154,362 – 15,154,453
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 83.97
Mean single sequence MFE -20.73
Consensus MFE -18.27
Energy contribution -18.17
Covariance contribution -0.11
Combinations/Pair 1.11
Mean z-score -2.58
Structure conservation index 0.88
SVM decision value 1.85
SVM RNA-class probability 0.979946
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15154362 91 + 22224390
GUUGUUGGUUGUGGACCGCUGCUUUCAUGUACAUAUGUAAUUGCAAGUGUCCCAUUUUGCAAUUACACUUCUACAUGCACAUACAUAUACG
((...((..((((............((((((.(..((((((((((((........))))))))))))..).))))))))))..))...)). ( -23.30)
>DroEre_CAF1 5216 78 + 1
-----------UGGCCCGCAGCGUUUAUGUACAUAUGUAAUUGCAAGUGUCCCAUUUUGCAAUUACAUUUCUAUAUGC--AUACAUAUAUG
-----------..((.....))((.((((((...(((((((((((((........)))))))))))))...)))))).--..))....... ( -18.60)
>DroYak_CAF1 5041 80 + 1
-----------UGGCCCGAAGCGUUUAUGUACAUAUGUAAUUGCAAGUGUCCCAUUUUGCAAUUACAUUUCUAUAUGCACAUACAUAUAUG
-----------..((.....))((.((((((...(((((((((((((........)))))))))))))...)))))).))........... ( -20.30)
>consensus
___________UGGCCCGCAGCGUUUAUGUACAUAUGUAAUUGCAAGUGUCCCAUUUUGCAAUUACAUUUCUAUAUGCACAUACAUAUAUG
.........................((((((...(((((((((((((........)))))))))))))...)))))).............. (-18.27 = -18.17 +  -0.11)

alignment

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secondary structure

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dotplot

Postscript

Window 6

Location 15,154,362 – 15,154,453
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 83.97
Mean single sequence MFE -21.90
Consensus MFE -18.61
Energy contribution -18.83
Covariance contribution 0.23
Combinations/Pair 1.10
Mean z-score -3.02
Structure conservation index 0.85
SVM decision value 2.02
SVM RNA-class probability 0.985929
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15154362 91 - 22224390
CGUAUAUGUAUGUGCAUGUAGAAGUGUAAUUGCAAAAUGGGACACUUGCAAUUACAUAUGUACAUGAAAGCAGCGGUCCACAACCAACAAC
......(((.(((.((((((.(.((((((((((((..........)))))))))))).).))))))...)))..(((.....))).))).. ( -26.80)
>DroEre_CAF1 5216 78 - 1
CAUAUAUGUAU--GCAUAUAGAAAUGUAAUUGCAAAAUGGGACACUUGCAAUUACAUAUGUACAUAAACGCUGCGGGCCA-----------
..((((((...--.))))))...((((((((((((..........))))))))))))............((.....))..----------- ( -17.40)
>DroYak_CAF1 5041 80 - 1
CAUAUAUGUAUGUGCAUAUAGAAAUGUAAUUGCAAAAUGGGACACUUGCAAUUACAUAUGUACAUAAACGCUUCGGGCCA-----------
........((((((((((......(((((((((((..........)))))))))))))))))))))....(....)....----------- ( -21.50)
>consensus
CAUAUAUGUAUGUGCAUAUAGAAAUGUAAUUGCAAAAUGGGACACUUGCAAUUACAUAUGUACAUAAACGCUGCGGGCCA___________
........((((((((((......(((((((((((..........)))))))))))))))))))))......................... (-18.61 = -18.83 +   0.23)

alignment

Postscript

secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:50 2006