Locus 588

Sequence ID X_DroMel_CAF1
Location 1,655,857 – 1,655,950
Length 93
Max. P 0.589436
window937

overview

Window 7

Location 1,655,857 – 1,655,950
Length 93
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.80
Mean single sequence MFE -17.85
Consensus MFE -12.99
Energy contribution -12.77
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -1.25
Structure conservation index 0.73
SVM decision value 0.11
SVM RNA-class probability 0.589436
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1655857 93 + 22224390
---------------------------AUUUUCGUUGGCAUGCUUUUAUCUGUUUAGCGUGUUUAUUUGCACAGGAAACUCAUUACGCAAAUCUACCCCAAAGCUAUACGUAAAUCCUUU
---------------------------((((.((((((((((((...........)))))((..((((((..((....))......))))))..))......)))).))).))))..... ( -16.60)
>DroPse_CAF1 40900 117 + 1
AGUACACACACACACAAACACACAUACAUAUGC---AGAAUGUUUUUAUCUGUGUAGCGUGUUUAUUUGCACAGGAAACUCAUUACGCAAAUCUUCCCUAAAGCUAUGCGUAAAUCCUUU
((((.((((.((((((.........((((....---...)))).......))))).).)))).)))).....((....))..(((((((...(((.....)))...)))))))....... ( -19.89)
>DroSec_CAF1 20721 93 + 1
---------------------------AUUUUCGUUGGCAUGCUUUUAUCUGUUUAGCGUGUUUAUUUGCACAGGAAACUCAUUACGCAAAUCUACCCCAAAGCUAUACGUAAAUCCUUU
---------------------------((((.((((((((((((...........)))))((..((((((..((....))......))))))..))......)))).))).))))..... ( -16.60)
>DroSim_CAF1 9966 93 + 1
---------------------------AUUUUCGUUGGCAUGCUUUUAUCUGUUUAGCGUGUUUAUUUGCACAGGAAACUCAUUACGCAAAUCUACCCCAAAGCUAUACGUAAAUCCUUU
---------------------------((((.((((((((((((...........)))))((..((((((..((....))......))))))..))......)))).))).))))..... ( -16.60)
>DroYak_CAF1 21279 93 + 1
---------------------------AUUUUCGUUGGCAUGCUUUUAUCUGUUUAGCGUGUUUAUUUGCACAGGAAACUCAUUACGCAAAUCUACCCCAAAGCUAUACGUAAAUCCUUU
---------------------------((((.((((((((((((...........)))))((..((((((..((....))......))))))..))......)))).))).))))..... ( -16.60)
>DroPer_CAF1 42824 117 + 1
AGUACACACACAUACAAACACACAUACAUAUGC---AGAAUGUUUUUAUCUGUAUAGCGUGUUUAUUUGCACAGGAAACUCAUUACGCAAAUCUUCCCUAAAGCUAUGCGUAAAUCCUUU
............................(((((---(((.........))))))))..((((......))))((....))..(((((((...(((.....)))...)))))))....... ( -20.80)
>consensus
___________________________AUUUUCGUUGGCAUGCUUUUAUCUGUUUAGCGUGUUUAUUUGCACAGGAAACUCAUUACGCAAAUCUACCCCAAAGCUAUACGUAAAUCCUUU
.........................................(..(((((..((.((((((((......))))((....))......................)))).)))))))..)... (-12.99 = -12.77 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:38 2006