| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,132,499 – 15,132,665 |
| Length | 166 |
| Max. P | 0.669372 |
| Location | 15,132,499 – 15,132,591 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 77.78 |
| Mean single sequence MFE | -27.65 |
| Consensus MFE | -20.66 |
| Energy contribution | -20.85 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669372 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15132499 92 - 22224390 GGUUUCCGGCCGGGAAACCCUCGGCGAGUUCAUGCUCACCCAGUACACCGGGAAAAAAGAAAACGUUGCUAA-AACUAGAGUUUUGCACAAAA----------------------- ..(((((((..((....))((.((.((((....)))).)).))....)))))))..........((.((.((-(((....)))))))))....----------------------- ( -26.70) >DroSec_CAF1 43928 106 - 1 GGUUUCCGGCCGGGAAACCCUCGGCGAGUUCAUGCUCACCCAGUACACCGGAAAAAA---AAACGUUGCUGAAAGCUAGAGUUCUGCACGAAAGAAA-------AAAUAAUAAGCA ..(((((((..((....))((.((.((((....)))).)).))....)))))))...---......((((....((.((....)))).(....)...-------........)))) ( -28.60) >DroSim_CAF1 34659 106 - 1 GGUUUCCGGCCGGGAAACCCUCGGCGAGUUCAUGCUCACCCAGUACACCGGGAAAAA---AAACGUUGCUGAAAGCUAGAGUUCUGCACGAAAGAAA-------AAAUAAUAAGCA (((((((.....))))))).(((((((((....)))).(((........))).....---.......)))))..(((((....))...(....)...-------........))). ( -28.40) >DroYak_CAF1 51616 103 - 1 GGUUUCCGGCCGGGAAACCCUCGUCGAGUUCAUGCUCACCCAGUACACCGGGAGAAA----UGCGUGACUGAAAGCUGAACUUUUGCAAAAAAUAACUACAUUGGAA--------- (((((((.....)))))))...((.(((((((.(((....((((.(((((.......----)).)))))))..))))))))))..))....................--------- ( -26.90) >consensus GGUUUCCGGCCGGGAAACCCUCGGCGAGUUCAUGCUCACCCAGUACACCGGGAAAAA___AAACGUUGCUGAAAGCUAGAGUUCUGCACAAAAGAAA_______AAA_________ ..(((((((..((....))((.((.((((....)))).)).))....)))))))............(((.(((........))).)))............................ (-20.66 = -20.85 + 0.19)
| Location | 15,132,551 – 15,132,665 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.04 |
| Mean single sequence MFE | -45.74 |
| Consensus MFE | -35.74 |
| Energy contribution | -36.74 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15132551 114 - 22224390 ACGCCCACCAGCAGCGAGUGUGAGCGAGAGCGCAGCAACAACCUGCGUUGGAAAGCUG------GCGAGACCUUGACUAAGGUUUCCGGCCGGGAAACCCUCGGCGAGUUCAUGCUCACC ..((......))...((((((((((....((.((((..((((....))))....))))------))((((((((....))))))))..((((((.....))))))..))))))))))... ( -45.40) >DroSec_CAF1 43994 114 - 1 ACACCCACCAGCAGCUGGUGCGAGCGAGAGCGCAGCAACAACCUGCGUUGCAAAGCUG------GCGAGACCUUGACUACGGUUUCCGGCCGGGAAACCCUCGGCGAGUUCAUGCUCACC .....((((((...)))))).(((((.((((.(.(((((.......)))))...((((------((((((((........))))))..)))((....))...)))).)))).)))))... ( -44.80) >DroSim_CAF1 34725 114 - 1 ACACCCACCAGCAGCUGGUGCGAGCGAGAGCGCAGCAACAACCUGCGUUGGAAAGCUG------GCGAGACCUUGACUAAGGUUUCCGGCCGGGAAACCCUCGGCGAGUUCAUGCUCACC .....((((((...)))))).(((((.((((.((((..((((....))))....))))------(.((((((((....))))))))).((((((.....))))))..)))).)))))... ( -46.00) >DroEre_CAF1 50983 120 - 1 CAGCCCACCAGCAGCGGGUGCGAGCGAGAGCGCAGCAACAACCUGCGUUGAAAAGCUGGCGCUGGCGAGACCUUGACUAAGGUUUCCGGCCGGGAAACCCUCGCCGAGUUCAUGCUCACC ..((......)).((.(((((.(((...(((((((.......))))))).....))).))))).))((((((((....)))))))).(((.((....))...)))((((....))))... ( -49.90) >DroYak_CAF1 51679 112 - 1 --GCCCACCAGCAGCGGGUGCAAGCGAGAGCGCAGCAACAACCUGCGUUGAAAAGCUG------GCGAGACCUUGACUAAGGUUUCCGGCCGGGAAACCCUCGUCGAGUUCAUGCUCACC --((.(.(((((.((((((((..((....))...))....))))))..(....)))))------).).((.((((((...(((((((.....)))))))...)))))).))..))..... ( -42.60) >consensus ACGCCCACCAGCAGCGGGUGCGAGCGAGAGCGCAGCAACAACCUGCGUUGAAAAGCUG______GCGAGACCUUGACUAAGGUUUCCGGCCGGGAAACCCUCGGCGAGUUCAUGCUCACC .....((((.......)))).(((((.((((((.(((......)))(((....)))........))((((((((....))))))))..((((((.....))))))..)))).)))))... (-35.74 = -36.74 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:20 2006