Locus 5844

Sequence ID X_DroMel_CAF1
Location 15,104,776 – 15,104,883
Length 107
Max. P 0.997005
window9482

overview

Window 2

Location 15,104,776 – 15,104,883
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 94.02
Mean single sequence MFE -34.48
Consensus MFE -33.42
Energy contribution -33.06
Covariance contribution -0.36
Combinations/Pair 1.12
Mean z-score -1.74
Structure conservation index 0.97
SVM decision value 2.78
SVM RNA-class probability 0.997005
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15104776 107 + 22224390
AUUCUGUGGGCUGGCCGCAUUACGCAUACGCCGUGUGGUGUCUGCGUGGCAAAGGCUCCUUAAACUUCCGCUCAGUCCAUUCAUCUUCCACCCCCGCAUUCCGAGUC
.....((((((((((.((..((((((.(((((....))))).)))))))).(((....)))........)).))))))))........................... ( -31.40)
>DroSec_CAF1 17540 107 + 1
AUUCUGUGGGCUGGCCGCAUUACGCAUACGACAUGUGGCGUCUGCGUGGCAAAGGCUCCUUAAACUUCCGCUCAGCCCAUUCAUCUUCCACCCCCGCAUUCCACGUC
.....((((((((((.((..((((((.(((.(....).))).)))))))).(((....)))........)).))))))))........................... ( -29.60)
>DroSim_CAF1 21820 107 + 1
AUUCUGUGGGCUGGCCGCAUUACGCAUACGCCGUGUGGCGUCUGCGUGGCAAAGGCUCCUUAAACUUCCGCUCAGCCCAUUCAUCUUCCACCCCCGCAUUCCACGUC
.....((((((((((.((..((((((.(((((....))))).)))))))).(((....)))........)).))))))))........................... ( -36.00)
>DroEre_CAF1 25168 107 + 1
AUUGUGUGGGCUGGCCGCAUUACGCAUACGCCGUGUGGUGUCUGCGUGGCAAAGGCUCCUUAAACUUCCGCUCAGCCCAUUCAUCUUCCACCGCCGCAUUCCAGGUC
..((.((((((((((.((..((((((.(((((....))))).)))))))).(((....)))........)).)))))))).)).........(((........))). ( -37.90)
>DroYak_CAF1 22663 102 + 1
AUUGUGUGGGCUGGCCGCAUUACGCAUACGCCGUGUGGUGUCUGCGUGGCAAGGGCUCCUUAAACUUCCGCUCAGCCCAUUCAUCUUCCACCCCCGCACU-----UC
...(((((((.(((..((..((((((.(((((....))))).))))))))..(((((................))))).........)))..))))))).-----.. ( -37.49)
>consensus
AUUCUGUGGGCUGGCCGCAUUACGCAUACGCCGUGUGGUGUCUGCGUGGCAAAGGCUCCUUAAACUUCCGCUCAGCCCAUUCAUCUUCCACCCCCGCAUUCCACGUC
.....((((((((((.((..((((((.(((((....))))).)))))))).(((....)))........)).))))))))........................... (-33.42 = -33.06 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:43 2006