Locus 5834

Sequence ID X_DroMel_CAF1
Location 15,098,238 – 15,098,336
Length 98
Max. P 0.691217
window9466

overview

Window 6

Location 15,098,238 – 15,098,336
Length 98
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 79.72
Mean single sequence MFE -33.40
Consensus MFE -19.24
Energy contribution -18.80
Covariance contribution -0.44
Combinations/Pair 1.14
Mean z-score -2.04
Structure conservation index 0.58
SVM decision value 0.33
SVM RNA-class probability 0.691217
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15098238 98 - 22224390
AUGAAUAAAUACACCG-GUGUCCACUUCAGUCCACUGCG--GACACCUUCGCUGCGGUGUCCUGGACCA--GGACCUGUCCGCCGGACUCGAUUCGAUUCGCU----------------
.(((((.......(((-(((..((..((.(((((....(--((((((........))))))))))))..--.))..))..)))))).....))))).......---------------- ( -34.90)
>DroSim_CAF1 15419 98 - 1
AUGAAUAAAUAUACCG-GUGUCCACUUCAGUCCACUACG--GACACCUUCGCUGCGGUGUCCUGGACCA--GGACCUGUCCGCCGGACUCGAUUCGAUUCGCU----------------
.(((((.......(((-(((..((..((.(((((....(--((((((........))))))))))))..--.))..))..)))))).....))))).......---------------- ( -34.90)
>DroEre_CAF1 18517 101 - 1
AUGCAUAAAUAUACCGGCGGUCCACUUCGGUCCACUCCGCAGAUACCUUCGCUCCGGUGUCCUGGACUA--GAACCUGACCCCCGGAGUCAAUUCCAUUCCAU----------------
.............((((.((((...(((((((((.......((((((........)))))).)))))).--)))...)))).)))).................---------------- ( -28.40)
>DroYak_CAF1 16030 116 - 1
AUGAAUAAAUAUACCG-AGGUCCACUUCAGUCCACACCG--GACACCUUCGCUGCGGUGUCCUGGACCAGAGAACCUGUUCCCCGGAUUCUAUUCGAUUCGAUUGGAUUCGAGAGGCGA
................-((((...(((..(((((....(--((((((........))))))))))))..))).))))((..(.(((((((...(((...)))..))))))).)..)).. ( -35.40)
>consensus
AUGAAUAAAUAUACCG_GGGUCCACUUCAGUCCACUCCG__GACACCUUCGCUGCGGUGUCCUGGACCA__GAACCUGUCCCCCGGACUCGAUUCGAUUCGAU________________
.............(((.(((..((.(((.(((((.......((((((........)))))).)))))....)))..))..))))))................................. (-19.24 = -18.80 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:28 2006