| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,070,572 – 15,070,676 |
| Length | 104 |
| Max. P | 0.512065 |
| Location | 15,070,572 – 15,070,676 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 85.98 |
| Mean single sequence MFE | -30.50 |
| Consensus MFE | -24.03 |
| Energy contribution | -23.37 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.79 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.512065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15070572 104 - 22224390 ---------GCCAUUUUCCACCAGCUCCAGCUCCACUAUACGAGAUGGAACUAGAGCUAUCCUCUUGUCUGGCGUAUGCUCCUGGAUACCUGGGGGAAAUCUCCAUCGCCCAA ---------...(((((((.((((.(((((.((((((.....)).))))....(((((((((........)).))).)))))))))...)))))))))))............. ( -29.50) >DroSec_CAF1 31626 102 - 1 ---------GCCAUUUCCCACC--UUCCAGCUCCACUAUGCGAGAUGGAACUAGAGCUUUCCUCUUGUCUGGCGUAUGCUCCUGGAGACCUGGGGGAAAUCUCCAUCGCCCAA ---------...(((((((.((--((((((...((.(((((.((((((((........))))....)))).)))))))...))))))....)))))))))............. ( -29.90) >DroEre_CAF1 22518 111 - 1 CUGCCAUCCGCCAUUUUCCACC--UUCCAUCUCCAGUACACGAGAUGGAACUAGAGCUAUCCGCCUGCCUGCCGUAUGCUCCUGGAUACCUGGGGGAAAUCUCCAUCGCCCAA ......(((.(((...((((..--(((((((((........)))))))))...((((...(.((......)).)...)))).))))....))).)))................ ( -32.10) >consensus _________GCCAUUUUCCACC__UUCCAGCUCCACUAUACGAGAUGGAACUAGAGCUAUCCUCUUGUCUGGCGUAUGCUCCUGGAUACCUGGGGGAAAUCUCCAUCGCCCAA ............(((((((.((...((((.(((........))).)))).(((((((...(.((......)).)...))).))))......)))))))))............. (-24.03 = -23.37 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:13 2006